Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30432
         (405 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15178| Best HMM Match : Carn_acyltransf (HMM E-Value=1.5)           29   1.4  
SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)                     27   4.4  

>SB_15178| Best HMM Match : Carn_acyltransf (HMM E-Value=1.5)
          Length = 333

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -2

Query: 245 DEDGDRCLWYLKAPLMDRFGSYLMNHISKSMEKILLSYTDYPLLLR 108
           D    RCLWY  A   DRFG        +S E    +   Y ++LR
Sbjct: 4   DTKQGRCLWYCPASCDDRFGLRPEEPYLQSAELPSQAQVSYSIILR 49


>SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)
          Length = 482

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
 Frame = +3

Query: 219 PQAPVTVLVEPVACDEGLDEPI--HPQTQPTEFL---AGSSQCGRD-YDPMEHSAKNCS- 377
           PQAP  +    +A      EP+  H   + T  +    G+ +  ++ Y+PM H+A+N S 
Sbjct: 73  PQAPTHIGQPLIALKSHAFEPVKAHTSIRSTAEIDEGIGTHEPQQEIYNPMHHAAQNGST 132

Query: 378 C*PVLPTP 401
           C  ++PTP
Sbjct: 133 CTALVPTP 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,248,505
Number of Sequences: 59808
Number of extensions: 261623
Number of successful extensions: 786
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)