Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30432
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098995-14|AAC67475.1|  327|Caenorhabditis elegans F-box b prot...    29   1.7  
Z92784-5|CAB07196.3|  554|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U88308-17|AAK68214.1|  657|Caenorhabditis elegans Uncoordinated ...    27   3.9  
Z77661-9|CAI46604.1|  345|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>AF098995-14|AAC67475.1|  327|Caenorhabditis elegans F-box b protein
           protein 47 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = -1

Query: 192 VWIISHESYIKIDGKNTFILHRLPFIA*MWGRAHSPPGV------KWLLEPIDIYNVNAP 31
           +++  +  Y+K   K  FI H   FIA      HS   V       WL   I I+NV   
Sbjct: 58  IFLPDYHFYLKGSAKFIFIPHNRKFIARSSSGEHSNYSVPQFDAKSWLKHLIYIFNVTEI 117

Query: 30  HTLR 19
           H+LR
Sbjct: 118 HSLR 121


>Z92784-5|CAB07196.3|  554|Caenorhabditis elegans Hypothetical
           protein F31C3.6a protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 240 LVEPVACDEGLDEPIHPQTQPT--EFLAGSSQCGRDYDPMEHSAKNCSC*PVLPTPS 404
           L+  V  + G  + IHP   P+  E L  +    +++  + +S K CSC   L TPS
Sbjct: 36  LISSVDRNIGESDIIHPSVCPSSCEHLHQAKPYVQNHTDINYSIKECSCICPLATPS 92


>Z66524-7|CAA91419.2|  626|Caenorhabditis elegans Hypothetical
           protein T13H5.3 protein.
          Length = 626

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +3

Query: 270 LDEPIHPQTQPTEFLAGSSQ-----CGRDYDPMEHSAKNCS 377
           L EP+ P  + T + + + +     CGRD  P+E  A  C+
Sbjct: 477 LKEPVKPSQKITWYTSDAGEGKRGRCGRDVPPLEGEAPTCN 517


>U88308-17|AAK68214.1|  657|Caenorhabditis elegans Uncoordinated
           protein 11, isoform c protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = +3

Query: 219 PQAPVTVLVEPVACDEGLDEPIHPQTQPTEFLAGSSQCGRDYDPMEHSAKNCSC*PVLP 395
           PQ      V P    +G   PI+P   P+   A S+Q   D D  +   KN     ++P
Sbjct: 472 PQMHNAPPVPPPPASQGAPAPINPFADPSATAASSAQPFGDPDDFKFEQKNVKIKILIP 530


>Z77661-9|CAI46604.1|  345|Caenorhabditis elegans Hypothetical
           protein F40G12.15 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 168 YIKIDGKNTFILHRLPFIA*MWGRAHSPP 82
           Y+  D K TFIL   P +  +W   ++PP
Sbjct: 146 YVLFDEKRTFILLTFPILYGIWFLWYNPP 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,699,509
Number of Sequences: 27780
Number of extensions: 194338
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)