Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30432
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   1.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   1.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   2.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    20   9.3  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 378 KSSSSQNVPSDRNRVRTEKIRRETQWAV 295
           +S S  +    R+R + E++RR  +W +
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 378 KSSSSQNVPSDRNRVRTEKIRRETQWAV 295
           +S S  +    R+R + E++RR  +W +
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 378 KSSSSQNVPSDRNRVRTEKIRRETQWAV 295
           +S S  +    R+R + E++RR  +W +
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 378 KSSSSQNVPSDRNRVRTEKIRRETQWAV 295
           +S S  +    R+R + E++RR  +W +
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 378 KSSSSQNVPSDRNRVRTEKIRRETQWAV 295
           +S S  +    R+R + E++RR  +W +
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 378 KSSSSQNVPSDRNRVRTEKIRRETQWAV 295
           +S S  +    R+R + E++RR  +W +
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 378 KSSSSQNVPSDRNRVRTEKIRRETQWAV 295
           +S S  +    R+R + E++RR  +W +
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMI 44


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 378 KSSSSQNVPSDRNRVRTEKIRRETQWAV 295
           +S S  +    R+R + E++RR  +W +
Sbjct: 17  QSRSEDSETGLRSRTQEERLRRRREWMI 44


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 6   PSNYISRCVAHLRCRC 53
           P NY+  C   ++C C
Sbjct: 72  PQNYLGICAEGMQCSC 87


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -1

Query: 87  PPGVKWLLEPIDIYNVNAPHTLRYSSKVL 1
           PP   W  + +   N +  + +RY S VL
Sbjct: 104 PPDKVWKPDIVLFNNADGNYEVRYKSNVL 132


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 317 GEKLSGLCLWVNWLVESFVASD 252
           G+K+   CL     ++SF  SD
Sbjct: 270 GDKVGPACLPFQHFLDSFAGSD 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,559
Number of Sequences: 438
Number of extensions: 2112
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)