Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30432
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    29   1.6  
At3g26700.1 68416.m03339 protein kinase family protein contains ...    27   6.3  

>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 267 GLDEPIHPQTQPTEFLAGSSQCGRDY 344
           G D+  HP   PT+F +G S   RD+
Sbjct: 391 GHDDKAHPPIHPTKFSSGESNWSRDH 416


>At3g26700.1 68416.m03339 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 380

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 127 ITLYCLDVGTSSQPTWC*VVTGAHRHLQRK 38
           +TL C+DV +  +PT   VVT   R L ++
Sbjct: 326 LTLRCVDVSSEKRPTMSFVVTELERILDKE 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,215,519
Number of Sequences: 28952
Number of extensions: 181885
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)