Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30430
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    28   1.5  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    27   1.9  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    27   2.5  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   5.9  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    25   7.8  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   7.8  

>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 203 KGIPKRSRSVCWTKERLHLYIDKRH 129
           KG+P  + S CW+ +  ++YI +R+
Sbjct: 394 KGVPPWAMSACWSPDGNNIYIGRRN 418



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 540 KKKERKRTRKQNPISKINYRLKKKQMY--I*ILSVPRA 433
           +KKE + T K+NP+ K+  +      Y  +  L++P A
Sbjct: 81  EKKETEETPKENPLEKLKQKASTASFYDVVPTLAIPMA 118


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = -3

Query: 227 GREESDAVKGIPKRSRSVCWTKERLHLYIDKRHLVLLCLVDTLEADRLFATIRKVEQGIQ 48
           GR+  D + G+P++ RS          +  K  L+ + +    +  +L ++I+K+ Q I 
Sbjct: 347 GRDRLDELYGVPQKLRSFQRFLRTYPEWRKKVVLIQITISSAFKHPKLLSSIKKLVQAIN 406

Query: 47  VVSGIED 27
              G +D
Sbjct: 407 QEFGTDD 413


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 237 SGLFV-VFILLSI---TFYGIMTMMDIKTMDRFDDPKGK 341
           +G+FV V + LSI   TF+ + T    K    FDDP GK
Sbjct: 431 AGIFVPVIVALSISTFTFWFLFTKYSSKYPSVFDDPMGK 469


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 151 TFISINDTLYSCVSLILLKLTDCLQR*EKSSRAFKSSVA*RISS 20
           TF+   D  YSC+ +      DC ++  KS R    S   R+SS
Sbjct: 173 TFLPSEDEEYSCLDINTALFYDCARKLAKSLRFANVSRDPRLSS 216


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 490 KLQIKKKTNVHLDFICTASIIQIIPKKNLT 401
           K  +K KTN H++ I    +   +P+KN+T
Sbjct: 182 KCILKDKTNAHVNKIPQDEVNYSLPQKNIT 211


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 182 RSVCWTKERLHLYIDKRHLVLLCLVDTLEADRLFATIRKV 63
           +++ W KE    YI K    LLCL D+     LFA   KV
Sbjct: 338 QTITWAKE----YIKKAKDSLLCLPDSPARKALFALADKV 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,248
Number of Sequences: 5004
Number of extensions: 53368
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)