Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30430
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0075 - 11953723-11956203,11958213-11958512 30 1.5
05_04_0203 + 19016547-19016860,19017020-19017169,19017946-190180... 29 2.6
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 29 3.5
07_01_0505 - 3759254-3759490,3759846-3759989,3760135-3760347,376... 29 4.6
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701... 29 4.6
02_01_0080 + 558915-558962,559016-559209,559644-559965 28 6.0
12_02_0910 + 24225180-24225415,24225523-24225678,24226387-242264... 28 8.0
06_01_0245 - 1849156-1849197,1849300-1849341,1849564-1849605,184... 28 8.0
05_07_0340 + 29389314-29389627,29389966-29390112,29390654-293907... 28 8.0
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113... 28 8.0
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 28 8.0
01_05_0217 - 19390788-19391048,19392205-19392438,19393474-193937... 28 8.0
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 28 8.0
>08_02_0075 - 11953723-11956203,11958213-11958512
Length = 926
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 561 EKDVYQLKKKERKRTRKQNPISKINYRL 478
E + Y +KKK +K + NP+SK+N L
Sbjct: 91 ELEYYDVKKKVKKNQKSSNPLSKMNLPL 118
>05_04_0203 +
19016547-19016860,19017020-19017169,19017946-19018081,
19018222-19018323,19018556-19018675,19018800-19018880,
19019041-19019381,19020296-19020589,19020701-19021025,
19021167-19021400,19021506-19021760
Length = 783
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 566 YFYQVFFCFRKPNVRVYNSKYETSVYFW 649
+F + FR + VYN +YE+ FW
Sbjct: 610 FFSLAYLVFRHQIINVYNQQYESGAQFW 637
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 566 YFYQVFFCFRKPNVRVYNSKYETSVYFW 649
+F F +R + VYN +YE++ FW
Sbjct: 591 FFAFAFLVYRHQIINVYNQEYESAAAFW 618
>07_01_0505 -
3759254-3759490,3759846-3759989,3760135-3760347,
3760439-3760990,3761339-3761806,3761959-3762023,
3762133-3762265,3763798-3764022
Length = 678
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -1
Query: 268 DSNMNTTNRPDQMGAEKNPTQLKE---SPNGVEAFVGPK 161
+ NTT +P G +NP L + S NGV++ G K
Sbjct: 178 NKQQNTTGKPSNNGKTENPAALPQGDVSANGVDSLKGQK 216
>04_04_1462 -
33769122-33769151,33769385-33769426,33769571-33770158,
33770398-33770508,33770585-33770625,33771238-33771382,
33771578-33771781,33772626-33772769,33772991-33773183,
33774559-33774602,33774694-33774822,33774907-33774954,
33775058-33775120,33775198-33775236,33776694-33776767,
33777460-33777518,33777709-33777768,33777920-33778044,
33778693-33778751,33779418-33779511,33779572-33779625,
33779775-33779813,33780423-33780602
Length = 854
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 87 SVSFKSINETQEYKVSFIDIKVQP 158
SV S+N++ +YK FID+ V+P
Sbjct: 818 SVFLDSVNQSYDYKAYFIDLDVKP 841
>02_01_0080 + 558915-558962,559016-559209,559644-559965
Length = 187
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 564 QEKDVYQLKKKERKRTRKQNPISKINYRLKKKQMY 460
+E+D + KKK++++T + KI R KK+ Y
Sbjct: 87 KEEDASEKKKKKKRQTEEAEAEKKIEARKAKKEAY 121
>12_02_0910 +
24225180-24225415,24225523-24225678,24226387-24226450,
24226738-24226947,24227678-24227866,24228044-24228342,
24228575-24228851,24229045-24229317,24230316-24230549,
24230707-24230856
Length = 695
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 566 YFYQVFFCFRKPNVRVYNSKYETSVYFW 649
YF +F +R VY+ KY+T FW
Sbjct: 557 YFCLGYFIYRNQLFNVYSPKYDTGGRFW 584
>06_01_0245 -
1849156-1849197,1849300-1849341,1849564-1849605,
1849697-1849824,1850078-1850285,1850381-1850561,
1851761-1852114,1852577-1852803
Length = 407
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 42 DDLNALLDFSYRCKQSVSFKSINETQEY 125
DD N L D SY K+ VSF+ I E+ +
Sbjct: 248 DDQNFLEDLSYELKEVVSFEPIFESHRW 275
>05_07_0340 +
29389314-29389627,29389966-29390112,29390654-29390789,
29391098-29391199,29391801-29391920,29392033-29392113,
29392578-29392918,29393069-29393314,29394195-29394519,
29395123-29395356,29395437-29395691
Length = 766
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 566 YFYQVFFCFRKPNVRVYNSKYETSVYFWCS 655
+F + +R + VYN +YE+ FW S
Sbjct: 593 FFGLAYVVYRHQIINVYNQQYESGAQFWPS 622
>05_01_0164 +
1134815-1134911,1135078-1135278,1135875-1136156,
1136237-1136271,1136356-1136445,1137228-1137357,
1137400-1138004,1138128-1138562
Length = 624
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/85 (27%), Positives = 34/85 (40%)
Frame = -3
Query: 269 GQQYEHNEQTGPDGGREESDAVKGIPKRSRSVCWTKERLHLYIDKRHLVLLCLVDTLEAD 90
G E PDG EE+ PKR ++ R L D ++DT E
Sbjct: 49 GDSPEMRRVVDPDGATEEAPEQSESPKRRKAKAGVNLRKSLAWDSAFFTSEGVLDTEELA 108
Query: 89 RLFATIRKVEQGIQVVSGIEDLVNS 15
+ +T RK QG ++ E++ S
Sbjct: 109 VVNSTFRKA-QGSRLPGIAEEMRRS 132
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 27.9 bits (59), Expect = 8.0
Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Frame = -3
Query: 299 HHGHDAIEGYGQQYEHNEQTGPDGGREESDAVKGIPKRSRSVCWTKERLHLYIDKRHLVL 120
HH I G + H +Q DG ES+++ WT+ L
Sbjct: 628 HHADGGIAGPSNKNHHVQQNVHDGSDSESESID-------LNSWTRSGGPLMRTASANKF 680
Query: 119 LCLVDTLEADRLFATIRKVEQGIQVVS-GIEDLVNSRIG 6
+ V LE D F TI E VV+ LV+ IG
Sbjct: 681 VSFVQNLEIDTEFRTISSREDRTDVVTPNANFLVSQAIG 719
>01_05_0217 -
19390788-19391048,19392205-19392438,19393474-19393798,
19395781-19396121,19396422-19396502,19396640-19396759,
19397028-19397129,19397811-19397946,19398508-19398654,
19399024-19399337
Length = 686
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 566 YFYQVFFCFRKPNVRVYNSKYETSVYFWCS 655
+F + +R + VYN +YE++ FW S
Sbjct: 511 FFGLAYVVYRHQIINVYNQEYESAAAFWPS 540
>01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 231 IWSGLFVVFILLSITFYGIMT 293
+W F+ F LL TFYG+MT
Sbjct: 1292 LWYLFFMYFTLLYFTFYGMMT 1312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,652,000
Number of Sequences: 37544
Number of extensions: 303094
Number of successful extensions: 1005
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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