Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30430
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   4e-12
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_8395| Best HMM Match : Arm (HMM E-Value=2.3)                        28   8.1  
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 28   8.1  

>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 30/57 (52%), Positives = 39/57 (68%)
 Frame = +3

Query: 189  FGDSFNCVGFFSAPIWSGLFVVFILLSITFYGIMTMMDIKTMDRFDDPKGKTITINA 359
            F  +++CVGFFS PI  GL  V +LL I F+G+M +  I TMDRFDDP+G  I I +
Sbjct: 1045 FSYAYDCVGFFSIPILMGLLTVGVLLMILFFGVMAVFSITTMDRFDDPRGPGINIGS 1101


>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3296

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 215  SDAVKGIPKRSRSVCWTKERLHLYIDKRHLVLLCLVD-TLEADRLFATIRKVEQ 57
            +DA     +R   +      L+LY +KR L LLC  + TL   RL + + +V Q
Sbjct: 3065 NDACMTESRREERILQLLRLLNLYFEKRKLTLLCFAEFTLHLTRLGSEMLQVAQ 3118


>SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1138

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +2

Query: 362  RVIKKILKYIYTRC*---VFFWYNLYNA-RGTDKI*MYICFFFNL*F 490
            R+ K IL + Y       V FWY LYN   G++ I      FFNL F
Sbjct: 980  RITKMILYFFYKNAMFVLVLFWYQLYNGFSGSNAIDDLSLIFFNLIF 1026


>SB_8395| Best HMM Match : Arm (HMM E-Value=2.3)
          Length = 412

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 47  LECPARLFLSLQTVCQLQEYQRDTRVQGVVYRY 145
           LE   RL+  L+  C+L  Y RD    G  +RY
Sbjct: 83  LEVSCRLWYLLEVSCRLCTYSRDLAGYGTYWRY 115


>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = -2

Query: 594 RKQKNT**K*QEKDVYQLKKKERKRTRKQNPISKINYRLKKKQ 466
           +K+K    K Q ++  +L+KKE+K   K+    +IN ++++K+
Sbjct: 363 KKEKERLEKKQREEKDRLEKKEKKEEEKRKKEEEINAKIEEKK 405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,736,759
Number of Sequences: 59808
Number of extensions: 371957
Number of successful extensions: 1433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)