Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30430
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100675-2|AAC69004.1|  451|Caenorhabditis elegans Hypothetical ...    56   3e-08
Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei...    27   9.5  

>AF100675-2|AAC69004.1|  451|Caenorhabditis elegans Hypothetical
           protein Y55H10A.1 protein.
          Length = 451

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
 Frame = +3

Query: 48  LNALLDFSYRCKQS--VSFKSINETQEYKVSFIDIKVQPFF--GPTN--ASTPFG-DSFN 206
           LN++  +S  C QS  V F +  ++    V+ ++ ++Q F    P     S  F   + +
Sbjct: 339 LNSVAGWSLACGQSQAVFFPTNEQSVRIGVALMNTQIQLFNYQNPEKWVESAHFTLQTED 398

Query: 207 CVGFFSAPIWSGLFVVFILLSITFYGIMTMMDIKTMDRFDDPKGKTITINAGE 365
           C G FS+  W G+    +L++   +G + +  ++TMDRFDDPK + I IN  E
Sbjct: 399 CTGTFSSGSWMGIVSALVLIAGLMFGYVMLQSVQTMDRFDDPKQRQIVINVRE 451


>Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical
           protein F25F2.1b protein.
          Length = 584

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 540 KKKERKRTRKQNPISKINYRLKKKQ 466
           KKK+ K T+K+N + K N + KKKQ
Sbjct: 17  KKKKEKSTQKKNSLEKKNKKDKKKQ 41


>Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical
           protein F25F2.1a protein.
          Length = 581

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 540 KKKERKRTRKQNPISKINYRLKKKQ 466
           KKK+ K T+K+N + K N + KKKQ
Sbjct: 17  KKKKEKSTQKKNSLEKKNKKDKKKQ 41


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/50 (26%), Positives = 19/50 (38%)
 Frame = -3

Query: 326 IEPIHGFNVHHGHDAIEGYGQQYEHNEQTGPDGGREESDAVKGIPKRSRS 177
           I P HG + HH H A  G+ + + H+           S +       S S
Sbjct: 74  ISPHHGHHTHHAHGAHPGHHEVHHHHHHVKAQDSSSSSSSSSSSSSSSSS 123


>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical protein
            F22E10.3 protein.
          Length = 1327

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 555  DVYQLKKKERKRTR-KQNPISKINYRLKKKQMY 460
            D YQ   K++KR+  K+  I  INY L +  MY
Sbjct: 971  DHYQTSSKQQKRSELKKGMIEAINYSLTQSFMY 1003


>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
            related (146.8 kD)(pgp-14) protein.
          Length = 1327

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 555  DVYQLKKKERKRTR-KQNPISKINYRLKKKQMY 460
            D YQ   K++KR+  K+  I  INY L +  MY
Sbjct: 971  DHYQTSSKQQKRSELKKGMIEAINYSLTQSFMY 1003


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,356
Number of Sequences: 27780
Number of extensions: 297760
Number of successful extensions: 1103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)