Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30429
         (757 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    28   0.093
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.86 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   3.5  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   6.1  
AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan oxyge...    21   8.0  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.0  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.0  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 27.9 bits (59), Expect = 0.093
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 643 DTILLLPTSGSTGLPKAVLLPNRGNSCSST 732
           D  L+LPT G++ LP  V +P R  S +S+
Sbjct: 183 DIALVLPTQGASPLPLLVPIPQRTASTASS 212


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 642 LWIPFGNPKTVDVVTMPIY 586
           LW+  G PK   V+ MP Y
Sbjct: 316 LWVKLGTPKEKLVIGMPTY 334


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 607 CRYYAHL*N-PLEGRLRCKCKPLF*DQASHLKIFLCRCN 494
           C  + H  N P  G  RC+C+P F  +  H  I  C+ N
Sbjct: 38  CGEHGHCVNLPGVGH-RCQCQPGFTGKYCHENINDCKVN 75


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 642 LWIPFGNPKTV 610
           LW+ F NPK+V
Sbjct: 321 LWVGFDNPKSV 331


>AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 679 QWIHLWVVIILYPLDSLR 626
           Q   LW   I+Y LDS+R
Sbjct: 59  QAYELWFKQIIYELDSIR 76


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 679 QWIHLWVVIILYPLDSLR 626
           Q   LW   I+Y LDS+R
Sbjct: 59  QAYELWFKQIIYELDSIR 76


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 679 QWIHLWVVIILYPLDSLR 626
           Q   LW   I+Y LDS+R
Sbjct: 59  QAYELWFKQIIYELDSIR 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,400
Number of Sequences: 336
Number of extensions: 4298
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)