Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30429
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    35   0.011
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    33   0.058
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    31   0.13 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.18 
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    30   0.31 
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.95 
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.95 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    28   1.3  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    28   1.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   2.9  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    27   3.8  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    27   3.8  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    26   5.0  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   5.0  

>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 17/39 (43%), Positives = 26/39 (66%)
 Frame = +1

Query: 637 PEDTILLLPTSGSTGLPKAVLLPNRGNSCSSTYVLDVSH 753
           P+D +L+L TSG+TG PK V L ++ N C S + +  S+
Sbjct: 160 PDDVMLVLHTSGTTGRPKVVPLTHK-NLCRSIHNITTSY 197


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 634 NPEDTILLLPTSGSTGLPKAVLLPNR 711
           +PE+   ++ TSGSTGLPK V+L ++
Sbjct: 237 SPEEICCIMYTSGSTGLPKGVILSHK 262


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +1

Query: 634 NPEDTILLLPTSGSTGLPKAVL 699
           NPE  + LL TSGSTG PK V+
Sbjct: 263 NPEHPLFLLYTSGSTGKPKGVV 284


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 38/158 (24%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
 Frame = +1

Query: 241 TGESFTNEQILKRAVSIARSIMARGAAGNNIMVVMRNHQN-LFSIYWSLLLSGALPFMMD 417
           T  SF+  ++   A+ +++ +  +    N ++ +M +H   LF    ++L SG     +D
Sbjct: 240 TFRSFSFLELHSLAIKLSKLVTCK----NEVVPIMVSHSPALFVGILAILYSGNAYCPID 295

Query: 418 PSTTVYELSYFLQLLEPSIVFCDREYYNDIKKSLDDLPDLKTEAYICNEDDLLEDFINGH 597
             T    + +  + ++ S      E+ N      ++   LK   Y  NE   +E  ++  
Sbjct: 296 VETRTERVHFISKDVDASFAIVSEEFVNRFP---NNTIILKVPEY--NES--MEIKVD-- 346

Query: 598 SNDIDSFRIPEGNPEDTILLLPTSGSTGLPKAVLLPNR 711
            ++I  F  PE + +    +L TSGSTG PK V + +R
Sbjct: 347 -DEIPPFPFPE-SLDSVAYVLYTSGSTGNPKGVAISHR 382


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 333 NVVPCGPSGHYRTCNRYSAFQNLLICETFSSRSVYHVC 220
           ++  CG   HY   N+  + +  L+CE+  +R V+H+C
Sbjct: 703 SIAACGAVHHYLVQNKLRS-RVALVCESGDAREVHHMC 739


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 352 HQNLFSIYWSLLLSGALPFMMDPSTTVYELSYFLQLLEPSIVFCDREYYNDIKKSLDDL 528
           H N+ S    L   G LP  +D  T V +LSY   LL+        + Y+D+ K++ +L
Sbjct: 167 HVNILSKADLLCTYGTLPMKLDFFTEVQDLSYLAPLLDRDKRL---QRYSDLNKAICEL 222


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
 Frame = +1

Query: 91  QLYLDEVLNEILAAKGVVPDAKERDRLILAEIAFHCLK-KRPNATNMINGSTGESFTNEQ 267
           QL L  VL+  L    V P A   D LI +    +           +++   GES  +E+
Sbjct: 294 QLQLKNVLSSFLEFLEVTPAASVSDMLIQSLSIINSPSFSLGKIVFLVHNIDGESLIDER 353

Query: 268 ILKRAVSIARSIMARGAAGNNIMVVMRNHQNLFSIYWSLLLSGALPFMMDPSTT 429
                 +IA S        N   +   +H N F++ W   L  +  F+M  +TT
Sbjct: 354 FQSALAAIASS-------KNVYFIASVDHVN-FALLWDTSLESSFNFVMHDATT 399


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 283 QRVSEFAHL*NFLQSIRLSCLWRLVVSLDNGKQFLLISIYPALLHLERHLW 131
           ++  +F  L N L   RLS  WR++VS  N +  + I   P L   ++ +W
Sbjct: 461 EKAKDFLELENSLSINRLSISWRIMVS--NFEPAIFIQHTPTLHGTDKSVW 509


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 97  YLDEVLNEILAAKGVVPDAKERDRLILA 180
           YLDEV NE++   G   DAKE DR +LA
Sbjct: 78  YLDEVKNELVEDGGF--DAKEVDRELLA 103


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 514  SLDDLPDLKTEAYICNEDDLLEDFINGHSNDIDSFRIPEGNPEDTILLLPTSGS 675
            S+D  PDL+  + I   +D L  F+   S D+   R  +G+PE++  +L T  S
Sbjct: 1722 SVDGFPDLQVSSDINVRNDRLSSFVMS-SEDL---RSSDGHPENSDSVLETISS 1771


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 430 VYELSYFLQLLEPSIVFCDREYYNDIKKSLDDLPDLKTEAYIC-NEDDLLEDFIN--GHS 600
           V+ L +F +   PSI+FC ++ +        + P  K    +  N +D  E F N   + 
Sbjct: 4   VFALGHFCEAEGPSIIFCTQKLHRSTVSKFFEHPTSKRSIGVTENGNDSPEAFKNELDNR 63

Query: 601 NDIDS 615
           N+ DS
Sbjct: 64  NNADS 68


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
 Frame = +1

Query: 370 IYWSLLLSGALPFMMDPSTTVYELSYFLQLLEPSIVFC-----DREYYNDIKKSLDDLPD 534
           +YW L  S A+   +D S     +S   QL  PS  FC     D    +     L     
Sbjct: 60  VYWELS-SLAILGKLDSSVCERAISSVRQLKGPSGGFCGGNGQDEHLLSTYASILSICLC 118

Query: 535 LKTEAYICNEDDLLEDFINGHSNDIDSFRIPEGNPED 645
             T+AY   E D L D++    N   SFR+      D
Sbjct: 119 DSTDAYSLIERDRLYDWLFSLKNPDGSFRVNNEGESD 155


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 640 EDTILLLPTSGSTGLPKAVLLPNR 711
           +D    + TSGSTG PK V+L +R
Sbjct: 245 DDICCYMYTSGSTGKPKGVVLLHR 268


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 604 DIDSFRIPEGNPEDTILLLPTSGSTGLPKAV 696
           DID+  I  G   +  L+  +SGSTG+PK++
Sbjct: 148 DIDAPCIRAGLEPEVALINHSSGSTGVPKSM 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,254,874
Number of Sequences: 5004
Number of extensions: 70908
Number of successful extensions: 223
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)