Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30428
         (708 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    27   0.20 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    25   0.60 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   1.4  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   3.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   4.3  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   9.8  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -2

Query: 593 SILYVLQLILDNGKLHHSV*RKY*TAKGETGIISASSSPPVFSFGQDL-GTFTSTSKFCK 417
           +ILY  ++++      + +     ++K  TG I  S S   F F +   GTF++T+  C+
Sbjct: 331 NILYFCRIMVYLNSAINPILYNLMSSKFRTGFIICSESNRKFYFKRARNGTFSTTANSCR 390

Query: 416 FYSFR 402
             +FR
Sbjct: 391 SSTFR 395


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 51  HHPRLRGDRQPAPATNPDPEPS 116
           H P  +   +PAPA+   PEP+
Sbjct: 250 HQPATKSKPRPAPASRNAPEPA 271



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 78  QPAPATNPDPEPSARTTLTQTDD 146
           QPA  + P P P++R      D+
Sbjct: 251 QPATKSKPRPAPASRNAPEPADN 273


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 81  PAPATNPDPEPSARTTLTQTD-DVVPCVNSVSESQDVTRT 197
           P P   P+P+P+  T    T     P  +S ++    T+T
Sbjct: 393 PEPVPTPEPQPTQTTESEPTQASEQPTESSTTQKPQTTKT 432


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = +3

Query: 204 DDALSNSNLTVAEDCANDEQEN 269
           DDA++N+N+ + ++  N +++N
Sbjct: 200 DDAINNNNIELYKEIFNGKRKN 221


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 321 IHRLSYLENQYS*P 280
           IHRL Y +N+Y  P
Sbjct: 319 IHRLVYFQNEYEHP 332


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 634 DVSNCWEEDL 663
           D+S+CW ED+
Sbjct: 36  DLSSCWSEDM 45


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = +1

Query: 454 SW-PKEKTGGEEDALI 498
           +W PK KT  ++DAL+
Sbjct: 149 TWEPKNKTDDDDDALV 164


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,551
Number of Sequences: 336
Number of extensions: 2984
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)