Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30428
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.12
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.86
SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy... 27 2.6
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 3.5
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 4.6
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 4.6
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac... 26 6.1
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 6.1
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 26 6.1
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 93 TNPDPEPSART-TLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCANDEQ 263
++ D +PSA + TL D++ +S+ SQ+ T + SD+ N N+ AE + DEQ
Sbjct: 365 SDEDDQPSADSPTLMHPSDLI---SSLVNSQNQTTSVSDNTGPNENVNEAEHISEDEQ 419
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.7 bits (61), Expect = 0.86
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 546 MKFSIIKNELQNIKNTALKRAESEVAALNRRIQLLGGGPREVRGASRD 689
+K+S +KNEL N +N L R E E++ L++++ R++R S D
Sbjct: 712 LKYSSLKNELINAQN-LLDRREEELSELSKKL----FEERKIRSGSND 754
>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 136
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +3
Query: 90 ATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCANDEQEN 269
A N + + + + DD + V+S S+S+D + + A +N++L ED N + EN
Sbjct: 71 ALNINEWKKLKQLIHEVDDSLGLVDSGSDSEDEIK---EKAENNASLKNDEDDLNTKTEN 127
Query: 270 ELD 278
+ D
Sbjct: 128 KTD 130
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 26.6 bits (56), Expect = 3.5
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = +3
Query: 90 ATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALS-NSNLTVAEDCANDEQE 266
A+N P P T + + P N S S D TN DD S NS + A E
Sbjct: 461 ASNDLPSPVVPTRSNSSSILQPSYNLNSHSSDRRNTNDDDQSSLNSQQLSNQAKAQGEVS 520
Query: 267 NELDRVKST 293
L V S+
Sbjct: 521 PTLSFVPSS 529
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 348 DGAEAIVAALPSDISDDDPETVELAKLRCTSE 443
DGAE ++ ++ + E E+ K +CT E
Sbjct: 55 DGAETLLQVFDTNFKKETKERKEMLKKKCTDE 86
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 99 PDPEPSARTTLT-QTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCANDEQENEL 275
P P++ + Q D P +NSV + ++ S+D LS + + +E+E L
Sbjct: 285 PSSSPNSDDAYSPQVDSYSPSINSVPYTSNIVENPSEDNLSPLPPPASGPYSQEEEETSL 344
>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
Lac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -3
Query: 604 LFSAVFFMFCNSFLIMENFIIVSEE-NIELP 515
LF A+FF FC F++ E + NI P
Sbjct: 110 LFYALFFTFCREFIMQEIIARIGRHFNIRAP 140
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/72 (25%), Positives = 33/72 (45%)
Frame = +3
Query: 69 GDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDC 248
G+R P+ D EP ++ L +T ++ P + E + V N + L + ++D
Sbjct: 166 GERSGFPSEGLDNEPESQRDLDETGNLAP-EDLKDEVKSVHEFNEPNDLRQQEESYSDD- 223
Query: 249 ANDEQENELDRV 284
+D NE + V
Sbjct: 224 -DDTNVNEFEDV 234
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/58 (22%), Positives = 25/58 (43%)
Frame = +3
Query: 21 CTPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTR 194
CT ++ H P ++ ++Q + + + T T DD P N++ + D R
Sbjct: 47 CTQLKIPCTYHLPPIKRNKQKKQQDSVSDDTPSEATTTTNDDRDPKYNALGNNLDAVR 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,770
Number of Sequences: 5004
Number of extensions: 50605
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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