Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30428
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30416| Best HMM Match : Prosystemin (HMM E-Value=2.2)               33   0.23 
SB_16991| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)           31   0.69 
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       30   1.6  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   30   1.6  
SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)                  29   3.7  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_45558| Best HMM Match : DUF718 (HMM E-Value=2.4)                    29   4.9  
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)               29   4.9  
SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7)                     29   4.9  
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           29   4.9  
SB_2344| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_1478| Best HMM Match : GAGE (HMM E-Value=1.6)                       28   6.5  
SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)                28   6.5  
SB_25135| Best HMM Match : VWA (HMM E-Value=2.2)                       28   6.5  
SB_20601| Best HMM Match : F5_F8_type_C (HMM E-Value=9.5e-24)          28   6.5  
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_30416| Best HMM Match : Prosystemin (HMM E-Value=2.2)
          Length = 455

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 9   HVHGCTPVRRRGHQHHPRLRGDRQPAP--ATNPDPEPSARTTLTQTDDVVPCVNSVSES 179
           HVH  TPV  R  +    LR + + A   +T P   P+A+  LT+ D   P V S++ES
Sbjct: 150 HVHTATPVALREFKIDGNLRKEPKKAAVVSTPPSRAPAAKPPLTRHDS--PFVKSITES 206


>SB_16991| Best HMM Match : Glyco_hydro_67N (HMM E-Value=3.1)
          Length = 258

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 90  ATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDAL 215
           +T  DP+ S   T  + D+V+ CV+  +E  D+ R+  D  L
Sbjct: 29  STATDPQASTDDTAKKKDEVIHCVDMQTERFDMARSQEDHRL 70


>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/57 (31%), Positives = 22/57 (38%)
 Frame = -1

Query: 198 SSLSHLEIH*HY*HKAQHRLFELRSFAQTARGRDSWRGRVDGRPLNAGGVGAPCAAR 28
           SS SH   H H+ H     L++LR    T   +  WR         A    APC  R
Sbjct: 204 SSSSHHHYHRHHLHHHHKALYKLRQHTPTLLAQQCWRNTGSELGRCANCPKAPCKLR 260


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 81  PAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRT 197
           P P   P P PS +TT+  TD  VP + S  +  + T+T
Sbjct: 247 PKPTPPPKPAPSLKTTIPLTD--VPPLTSKEKKHEKTKT 283


>SB_44903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
 Frame = +3

Query: 87   PATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRT-----NSDDALSNSNLTVA---- 239
            PA   DP  +  TT  ++DD    V+   ES  V +       SD A     + ++    
Sbjct: 953  PAIEDDPSSAVSTTFGESDDFTVLVSVGEESVPVEQVGGCGRESDQAQDELTVVLSVGEV 1012

Query: 240  EDCANDEQENELDRVKS 290
            +D + DEQE E+   K+
Sbjct: 1013 DDSSKDEQEKEIGAGKT 1029


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 24  TPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSE 176
           +PV  + +Q  P    D QP+    PD +PS   T       VP  +S  E
Sbjct: 741 SPVHTQDNQSSPVHTPDNQPSTVHTPDNQPSTVHTRGSQPSAVPTQDSQPE 791


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = +3

Query: 66  RGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAED 245
           R D+     TNP P P+   T T    V+          DV   +S+  L NS+ T   +
Sbjct: 375 RNDKSIKHVTNPTPPPTPSPTPTTPLQVLVVQGQNDIHVDVVDGSSEQNLINSHPTAKNN 434

Query: 246 CANDEQENEL 275
              D+  +++
Sbjct: 435 MRADDSNSQI 444


>SB_2835| Best HMM Match : Spectrin (HMM E-Value=0.14)
          Length = 1089

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/87 (21%), Positives = 37/87 (42%)
 Frame = +3

Query: 30  VRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDD 209
           VRR+ H+          P      + + ++   +T  DD+    + ++   D+T  + DD
Sbjct: 45  VRRQIHEAKNVEGHSLAPCRKLTSEDDITSEDDITSEDDITT-EDDITSEDDIT--SEDD 101

Query: 210 ALSNSNLTVAEDCANDEQENELDRVKS 290
             S  N+T  +D  +D+     D + S
Sbjct: 102 ITSEDNITSEDDITSDDDITSDDDITS 128


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +2

Query: 2    RTPRPRLHPRAAQGAPTPPAFKGR---PS-TRPRHESRPRAVCANDLNSNRR 145
            RTP  R   R ++ +P+PP  + R   PS + PR E+R R++  +     RR
Sbjct: 1077 RTPEDRRRSRGSRRSPSPPKREPRRRSPSASPPRREARKRSLSRSPKREVRR 1128


>SB_45558| Best HMM Match : DUF718 (HMM E-Value=2.4)
          Length = 393

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
 Frame = -1

Query: 435 YIEVLQVLQFQGHHRIYQKEARQR*LPH-RLLQTFLQTRIHRL-SYLENQYS*PYLIRFL 262
           Y++ LQVLQ+   H+++Q     +   + +  Q F   + H+L  YL+      YL    
Sbjct: 150 YLKELQVLQYLKEHQVFQYLREHQVFQYLKEHQVFQYLKEHQLFQYLKEHQVFQYLKEHQ 209

Query: 261 VHHSHSPRLQ*DSNLKVHRHYSSLSHLEIH*HY*HKAQHRLFE 133
           V   +  + Q    LK H+ +    HL+ H  + +  +H++F+
Sbjct: 210 V-FQYQKKHQVFQYLKEHQVF---QHLKEHQVFQYLKEHQVFQ 248


>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
          Length = 1121

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = +3

Query: 81  PAPATN-PDPEPSARTTLTQTDDVVPCVN--SVSESQDVTRTNSDDALSNSNLTVAEDCA 251
           PA  T+ P   PS   + T     V   N  +  E QD T+ +    +SN N+TV  DCA
Sbjct: 415 PAKTTSEPSDTPSDTPSDTPAGVYVMRTNRQNCCELQD-TKGSRFCVISNGNVTVERDCA 473

Query: 252 NDEQENELDRVKS 290
            + +  +   V S
Sbjct: 474 ENPESRDAQTVTS 486


>SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7)
          Length = 836

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = +3

Query: 9   HVHGCTPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDV 188
           H+ G +  R +  + H R+ G   P P++     P  R  L++ D  +  + S    QD+
Sbjct: 723 HIPGISEYRVKAARRHARVVGRGVPVPSSQ---SPRMRIDLSKLDHSLSLITSNQVVQDL 779

Query: 189 TRTNSDDALSNSNLTVAEDC--ANDEQEN 269
           +       LSN ++     C   +D +EN
Sbjct: 780 SFGKKYLKLSNGDVLETPICYTHHDIREN 808


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +3

Query: 51  HHPRLRGDRQPA-PATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSN 227
           H  R   D++ A  + N + E  ++    Q DD+     +    Q V   ++DD  SNS 
Sbjct: 65  HVERKHADKETAGKSLNVNDESDSQDL--QVDDIPQLERNSDSEQMVNNNHADDTNSNSE 122

Query: 228 LTVAEDCANDEQENE 272
               E   N++Q+NE
Sbjct: 123 -EKFEQIVNNKQDNE 136


>SB_2344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 99  PDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALS 218
           P P PS   ++T     +  V S  ES DVT+    D +S
Sbjct: 327 PSPSPSDEPSITGLHVSISEVQSTLESLDVTKATGPDGIS 366


>SB_1478| Best HMM Match : GAGE (HMM E-Value=1.6)
          Length = 437

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
 Frame = +3

Query: 54  HPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVS---ESQDVTRTNSDDALSNS 224
           H  L G ++     +   E  A + + +    +   N+ +   ++  +  T+SDDA+S  
Sbjct: 90  HVELDGTKEDPVVVSSPEENEASSMMKRRGSALNGKNAKATLWKAAAIGNTSSDDAVSEY 149

Query: 225 NLTVAEDCANDEQENELD 278
             T  ED  +D+ + ELD
Sbjct: 150 KPTQDEDSDSDDGKEELD 167


>SB_29559| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
          Length = 858

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 9   HVHGCTPVRRRGHQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVP 155
           +V  CT +RRR H+   R R D     ++   P    R  L Q ++ +P
Sbjct: 240 YVKDCTRLRRRTHR---RRRDDNNDTESSEERPTDRERMMLAQEEETLP 285


>SB_25135| Best HMM Match : VWA (HMM E-Value=2.2)
          Length = 233

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 129 LTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCANDEQENELD 278
           +   DDV    + V  + DV   N+DD  +N ++  A+D  N++ +N  D
Sbjct: 164 VNNADDVDNNDDDVDNADDVN--NADDVDNNDDVNNADDADNNDNDNNHD 211


>SB_20601| Best HMM Match : F5_F8_type_C (HMM E-Value=9.5e-24)
          Length = 405

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 676 PRTSRGPPPSSWIRRFRAATSDSAL-FSAVFFMFCNSFLIMENFIIVS 536
           PR         WIR FR+ +S  ++ F AV+F  CN++L   + +I S
Sbjct: 326 PRPVMSSSNKLWIR-FRSNSSQPSVGFYAVYFPSCNAYLTNNSGVIKS 372


>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/33 (48%), Positives = 16/33 (48%)
 Frame = -1

Query: 105 GRDSWRGRVDGRPLNAGGVGAPCAARGCNRGRG 7
           GR  WRGR  G    AGG       RG  RGRG
Sbjct: 128 GRGGWRGRGGGEGNGAGG----GIGRGGGRGRG 156


>SB_31773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 510 AFGSSIFSSDTMMKFSIIKNELQ-NIKNTALKRAESEV 620
           +FG+S+   D+ +KF+++K E +     +A+K+  SEV
Sbjct: 177 SFGTSVQYLDSFVKFTLLKGEKEVKSHESAIKKGYSEV 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,896,359
Number of Sequences: 59808
Number of extensions: 434242
Number of successful extensions: 1734
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)