Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30428
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78540-3|CAB01735.2| 482|Caenorhabditis elegans Hypothetical pr... 34 0.11
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 32 0.35
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 32 0.35
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 32 0.35
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 32 0.35
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 32 0.35
AF047662-4|AAC04444.1| 145|Caenorhabditis elegans Hypothetical ... 31 0.81
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ... 31 1.1
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr... 30 1.9
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 29 2.5
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 29 2.5
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 2.5
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 29 3.3
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 29 3.3
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 4.3
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit... 29 4.3
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 29 4.3
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 29 4.3
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 29 4.3
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 29 4.3
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 29 4.3
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 29 4.3
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 29 4.3
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 29 4.3
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical pr... 28 5.7
U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 28 7.5
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 28 7.5
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 28 7.5
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 28 7.5
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 27 9.9
AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical ... 27 9.9
>Z78540-3|CAB01735.2| 482|Caenorhabditis elegans Hypothetical
protein C33G3.5 protein.
Length = 482
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +3
Query: 81 PAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCANDE 260
P+P+T +P + RT+ D + V +E + T +S+D +S++T ED +
Sbjct: 304 PSPST--EPSSTLRTSAVTPDSIQSTVTMTAEYKATTLNSSEDYSEDSSMTTGEDESAYT 361
Query: 261 QEN 269
+EN
Sbjct: 362 REN 364
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 652 EEDLERSEERLATATAKL 705
EEDLER+E+RL TAT+KL
Sbjct: 68 EEDLERTEDRLKTATSKL 85
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 652 EEDLERSEERLATATAKL 705
EEDLER+E+RL TAT+KL
Sbjct: 68 EEDLERTEDRLKTATSKL 85
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 652 EEDLERSEERLATATAKL 705
EEDLER+E+RL TAT+KL
Sbjct: 68 EEDLERTEDRLKTATSKL 85
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 652 EEDLERSEERLATATAKL 705
EEDLER+E+RL TAT+KL
Sbjct: 68 EEDLERTEDRLKTATSKL 85
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 652 EEDLERSEERLATATAKL 705
EEDLER+E+RL TAT+KL
Sbjct: 68 EEDLERTEDRLKTATSKL 85
>AF047662-4|AAC04444.1| 145|Caenorhabditis elegans Hypothetical
protein T22B2.6 protein.
Length = 145
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/26 (57%), Positives = 15/26 (57%)
Frame = +3
Query: 81 PAPATNPDPEPSARTTLTQTDDVVPC 158
P P T P P P TT T T DVVPC
Sbjct: 82 PPPETVPTPVPEVPTTTTPT-DVVPC 106
>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
protein C35E7.5a protein.
Length = 1262
Score = 30.7 bits (66), Expect = 1.1
Identities = 44/178 (24%), Positives = 66/178 (37%), Gaps = 9/178 (5%)
Frame = +3
Query: 84 APATNP-DPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNS-------DDALSNSNLTVA 239
A A P D E S +TQ ++ V V D T + +D + T A
Sbjct: 1062 ATAVEPLDFEESLSMDVTQQNESFEGVEHVEAEDDTQSTTTALEPSDIEDNCDVESTTTA 1121
Query: 240 EDCANDEQENELDRVKSTXXXXXXXXXXXXXXRSAGDGAEAIVAAL-PSDISDDDPETVE 416
+ + E +N LD + + A D ++ AL PSDI D+D E V
Sbjct: 1122 VEPLDFEDDNSLDITQESDSLELMEHV------EAEDDTKSTTTALEPSDIEDNDLELV- 1174
Query: 417 LAKLRCTSECTEVLAXXXXXXXXXCADYPGLAFGSSIFSSDTMMKFSIIKNELQNIKN 590
+ L + +++ AD G + GS I D M F+ K L + N
Sbjct: 1175 -SDLSDDNSSISMISSTSTAIEFSIADDSGSSMGSDISYLDRDMDFASDKESLVSESN 1231
>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
protein K09C4.10 protein.
Length = 1035
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 72 DRQPAPATNPDPEPSAR---TTLTQTDDVVPCVNSVSESQDVTRTNSDDALSN 221
D+QPA + N P P A+ L + + +PC++ SE+ + + D N
Sbjct: 472 DQQPAKSDNSSPSPRAQRLEQNLATSANTIPCLSGNSENSENSYAPKHDNAEN 524
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 84 APATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCAN 254
+P T+P PEP TT T + P + ++S+S N+ + N LT +E AN
Sbjct: 323 SPTTSPTPEPEPTTTATV---LAPTLKNLSDSG--VGINNVSTVLNETLTYSEMGAN 374
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 84 APATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCAN 254
+P T+P PEP TT T + P + ++S+S N+ + N LT +E AN
Sbjct: 305 SPTTSPTPEPEPTTTATV---LAPTLKNLSDSG--VGINNVSTVLNETLTYSEMGAN 356
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Frame = +3
Query: 57 PRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSV----SESQ-DVTRTNSDDALSN 221
P+ +P P P P+P+ T Q ++VP V + E+Q + +N + N
Sbjct: 1773 PQPTEPEEPLPIATPAPQPTEHTYGAQGPNIVPVVTAAPYVPQETQAPIAPSNPEPVQPN 1832
Query: 222 SNLTVA--EDCANDEQENELD 278
+ TV+ E N E+ +D
Sbjct: 1833 PSQTVSIPEPTGNIEEAEHVD 1853
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 5 TPRPRLHPRAAQGAPTPPAFKGRPSTRPRHESRP 106
T R HP Q P ++ RPS PR + RP
Sbjct: 1985 TTYQRPHPIKVQVRPATKPYRPRPSPAPRIQPRP 2018
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/71 (25%), Positives = 23/71 (32%)
Frame = +3
Query: 45 HQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNS 224
H HHP APAT P PS + + + NS + S T + S
Sbjct: 1386 HHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSSPAATSSGISIVKQKS 1445
Query: 225 NLTVAEDCAND 257
A D
Sbjct: 1446 QSIAVSPLARD 1456
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/71 (25%), Positives = 23/71 (32%)
Frame = +3
Query: 45 HQHHPRLRGDRQPAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNS 224
H HHP APAT P PS + + + NS + S T + S
Sbjct: 1386 HHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTSSPAATSSGISIVKQKS 1445
Query: 225 NLTVAEDCAND 257
A D
Sbjct: 1446 QSIAVSPLARD 1456
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 99 PDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNL 230
PDP P + +++ + VNS+S ++ VT NS +LSN L
Sbjct: 429 PDPIPEEAPSSSKSFGALESVNSLSPAKTVTNRNS-RSLSNDEL 471
>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
(imitation swi) homologprotein 1 protein.
Length = 1009
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 351 GAEAIVAALPSDISDDDPETV-ELAKLRCTSECTE 452
GAE + AA S ISDDD +T+ E A+++ T+E E
Sbjct: 608 GAEQVFAAKDSTISDDDIDTILEKAEVK-TAELNE 641
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 652 EEDLERSEERLATATAKL 705
EE+LER+EERL AT KL
Sbjct: 96 EEELERAEERLKIATEKL 113
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 585 KNTALKRAESEVAALNRRIQLL 650
K ++ AE+EVA+LNRR+ LL
Sbjct: 74 KEKTVQEAEAEVASLNRRMTLL 95
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 652 EEDLERSEERLATATAKL 705
EE+LER+EERL AT KL
Sbjct: 96 EEELERAEERLKIATEKL 113
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 585 KNTALKRAESEVAALNRRIQLL 650
K ++ AE+EVA+LNRR+ LL
Sbjct: 74 KEKTVQEAEAEVASLNRRMTLL 95
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 652 EEDLERSEERLATATAKL 705
EE+LER+EERL AT KL
Sbjct: 96 EEELERAEERLKIATEKL 113
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 585 KNTALKRAESEVAALNRRIQLL 650
K ++ AE+EVA+LNRR+ LL
Sbjct: 74 KEKTVQEAEAEVASLNRRMTLL 95
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 652 EEDLERSEERLATATAKL 705
EE+LER+EERL AT KL
Sbjct: 96 EEELERAEERLKIATEKL 113
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 585 KNTALKRAESEVAALNRRIQLL 650
K ++ AE+EVA+LNRR+ LL
Sbjct: 74 KEKTVQEAEAEVASLNRRMTLL 95
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 99 PDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNL 230
PDP P + +++ + VNS+S ++ VT NS +LSN L
Sbjct: 429 PDPIPEEAPSSSKSFGALESVNSLSPAKTVTNRNS-RSLSNDEL 471
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 652 EEDLERSEERLATATAKL 705
EE+LER+EERL AT KL
Sbjct: 96 EEELERAEERLKIATEKL 113
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 585 KNTALKRAESEVAALNRRIQLL 650
K ++ AE+EVA+LNRR+ LL
Sbjct: 74 KEKTVQEAEAEVASLNRRMTLL 95
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 652 EEDLERSEERLATATAKL 705
EE+LER+EERL AT KL
Sbjct: 5 EEELERAEERLKIATEKL 22
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 652 EEDLERSEERLATATAKL 705
EE+LER+EERL AT KL
Sbjct: 96 EEELERAEERLKIATEKL 113
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 585 KNTALKRAESEVAALNRRIQLL 650
K ++ AE+EVA+LNRR+ LL
Sbjct: 74 KEKTVQEAEAEVASLNRRMTLL 95
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 81 PAPATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNS 224
P P +P P P A TT+T+ VP + V T + + NS
Sbjct: 262 PNPVPSP-PPPPANTTVTEEKTTVPPATDEPAPKTVATTENPKPIDNS 308
>Z82083-3|CAB04971.1| 756|Caenorhabditis elegans Hypothetical
protein ZK1010.5 protein.
Length = 756
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 81 PAPATNPDPEPSARTTLTQTDDVVPC-VNSVSESQDVTRTNSDDALSNSNLTVAEDCAND 257
P+P+ P+PEP T + + V P N S +D T S++ T AE D
Sbjct: 643 PSPSPEPEPEPKPPVTPPKNETVDPVHENGTSGEKDGTPEAQPLKSSSNKKTQAE---KD 699
Query: 258 EQE 266
E+E
Sbjct: 700 EEE 702
>U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical
protein T22F7.3 protein.
Length = 988
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +2
Query: 26 PRAAQGAPTPPAFKGRPSTRPRHESRPRAVCANDLNSNRR 145
P A G P P PST P + V N L+S R
Sbjct: 130 PEAHNGNPNPATVLANPSTHPLNPGNYMPVLCNSLSSEVR 169
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 90 ATNPDPEPSARTTLTQTDDVVPCVNSVSESQDVTRTNSDDALSNSNLTVAEDCANDEQEN 269
A N P PS+ T+ ++TDDV + E +DV ++ D +S A+ +E E
Sbjct: 770 ARNAPPGPSSETSSSETDDV---MEEAKEPEDVLLLSTSD--PDSQRRGAQSVGVEEHEE 824
Query: 270 ELD 278
D
Sbjct: 825 TED 827
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
exchange factorfor RAS protein.
Length = 1413
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 8 PRPRLHPRAAQGAPTPPAFKGRPSTRPRHESRPRA 112
P P+LHPR P P K P T R S P A
Sbjct: 1328 PPPKLHPRRMTQQPMSPLAKS-PLTPSRDNSSPSA 1361
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +2
Query: 8 PRPRLHPRAAQGAPTPPAFKGRPSTRPRHESRPRA 112
P P+LHPR P P K P T R S P A
Sbjct: 1328 PPPKLHPRRMTQQPMSPLAKS-PLTPSRDNSSPSA 1361
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 8 PRPRLHPRAAQGAPTPPAFKGRPSTRPR 91
P P L PR AP PAF P PR
Sbjct: 159 PAPLLAPRPVLAAPAIPAFAPAPIIAPR 186
>AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical
protein Y105E8B.1f protein.
Length = 151
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 585 KNTALKRAESEVAALNRRIQLL 650
K ++ AE+EVA+LNRR+ LL
Sbjct: 74 KEKTVQEAEAEVASLNRRMTLL 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,180,666
Number of Sequences: 27780
Number of extensions: 315243
Number of successful extensions: 1733
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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