Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30428
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   3.7  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   3.7  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   3.7  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.7  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   5.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 423 LQVLQFQGHHRIYQKEARQR 364
           LQ    Q HHR YQ++ +Q+
Sbjct: 151 LQSTAVQDHHRPYQQQQQQQ 170


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 53  PPAFKGRPSTRPRHES 100
           P A++ RPS  PR ES
Sbjct: 159 PNAYRFRPSLNPRFES 174


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 53  PPAFKGRPSTRPRHES 100
           P A++ RPS  PR ES
Sbjct: 159 PNAYRFRPSLNPRFES 174


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 53  PPAFKGRPSTRPRHES 100
           P A++ RPS  PR ES
Sbjct: 159 PNAYRFRPSLNPRFES 174


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 53  PPAFKGRPSTRPRHES 100
           P A++ RPS  PR ES
Sbjct: 392 PNAYRFRPSLNPRFES 407


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 321 IHRLSYLENQYS*P 280
           IHRL Y +N+Y  P
Sbjct: 339 IHRLVYFQNEYEQP 352


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +3

Query: 156 CVNSVSESQDVTRTNSDDALSNSNLTVAEDCANDEQENELD 278
           CV +++  +  TR +++ ++  +   + +  AND  E  +D
Sbjct: 13  CVGALTIEELKTRLHTEQSVCKTETGIDQQKANDVIEGNID 53


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 6   PHVHGCTPVRRRGHQHHP 59
           P   G  P     HQHHP
Sbjct: 306 PSTAGFLPPSYHPHQHHP 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,540
Number of Sequences: 438
Number of extensions: 3626
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)