Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30427
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    28   1.3  
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    27   3.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.2  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   6.9  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   9.1  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    25   9.1  
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    25   9.1  

>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 608 IPPTHKVPSEQDDVLQNSLITYNDIRKCGVRSRGQH 501
           I P  K PS     L+NSL   ND+ K    SRG+H
Sbjct: 94  IQPPPKTPSSDSPSLENSLSNLNDLFK----SRGRH 125


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 11  HQDSWASTGSARRGRIC**LSECFRERPNSSRADVSRIRLMTDRS 145
           ++ S A  GS  R  +C  +     ++PNS+   V+R+RL T RS
Sbjct: 39  NKQSVALEGSPFRRGVCTRVFTVKPKKPNSAVRKVARVRLSTGRS 83


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = -1

Query: 415  HDDLVLESITKHLKSASERYFDKATHYDNHCRR*LLLDSVSHRSQLPSMP 266
            +D++  + ++  L+ A   YF+     +N     L+LD   H+    S+P
Sbjct: 1563 YDEIDTDQLSMDLQDALNAYFNNYVSEENRSHTVLVLDKSVHQFPWESLP 1612


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -1

Query: 508 ASIHIDILQVLQSCFRRLAVG-APWFVRNV 422
           AS  +D+  +L SC +RLA+   P F++++
Sbjct: 749 ASQMVDLQSILLSCIKRLAIAEQPRFIQSI 778


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 118 ANSSNDGSESRPTEKLNERQTGPKPTP 198
           ANSSN   ++R   K   +   PK TP
Sbjct: 507 ANSSNSSKKTRKRRKPTPKSFNPKATP 533


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 645 TYQAKGLDWPKRLSGV*EFL 704
           TY   G+DWP  LS + EFL
Sbjct: 289 TYPTCGMDWPYDLSYLTEFL 308


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = -3

Query: 206 LALGVGLGPV*RSLSFSVGRDSDPSLDEFAKHLPLNY*VSLGSTQTTISKSYPSWLSPCL 27
           L LG G G    +L F++   ++ ++   +    L +   LG+T T   K  P W SP L
Sbjct: 170 LVLGTG-GVSTFALQFALAAGANVTVTSSSDE-KLEFAKKLGATHTINYKKTPQWASPAL 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,815
Number of Sequences: 5004
Number of extensions: 63428
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)