Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30427
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    28   6.4  
U58756-9|AAC48086.1|  667|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
            protein T05C3.2 protein.
          Length = 1733

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 415  HDDLVLESITKHLKSASERYFDKATHYDNHCRR*LLLDSVSHRSQ 281
            HD + +  + KHL   +    +     D H  R L LDSVSH+ Q
Sbjct: 1304 HDTVFVAGVRKHLFLWNVSTTELLRSLDAHFGRILNLDSVSHQGQ 1348


>U58756-9|AAC48086.1|  667|Caenorhabditis elegans Hypothetical
           protein F58F9.7 protein.
          Length = 667

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -2

Query: 699 ILTPRSTFSANPNPWPGKSSSWESSWINPLNSAHT*SPFGTRRRVTKLAYNL 544
           I TP ST S   N  P K SSW S+ +N + SA+    +   +  +  AY L
Sbjct: 457 IETPMSTMSFL-NQKPSKFSSWSSNPVNDVLSAYRYLTYHLLQTTSAEAYRL 507


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,689,775
Number of Sequences: 27780
Number of extensions: 359168
Number of successful extensions: 842
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)