Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30427
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20580.1 68418.m02443 expressed protein predicted protein, Ar...    29   3.4  
At1g26540.1 68414.m03234 agenet domain-containing protein contai...    29   3.4  
At5g57035.1 68418.m07119 protein kinase family protein contains ...    29   4.5  
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea...    28   6.0  
At1g61390.1 68414.m06918 S-locus protein kinase, putative contai...    28   6.0  

>At5g20580.1 68418.m02443 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 348

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 490 ILQVLQSCFRRLAVGAPWFVRNVD 419
           I  ++ +C+  LA GAPW +++VD
Sbjct: 44  IYLIILACYAILAAGAPWILQSVD 67


>At1g26540.1 68414.m03234 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 695

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 112 CFANSSNDGSESRPTEKLNERQTGPKPTPSA 204
           C    S +G E+RPT  +N R+  P P PS+
Sbjct: 192 CNRYLSCNGDEARPTNIVNSRRVRPIPPPSS 222


>At5g57035.1 68418.m07119 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 786

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/30 (53%), Positives = 16/30 (53%)
 Frame = +3

Query: 345 ALSKYRSDADFRCFVIDSRTRSSCRSTFLT 434
           AL KY SD D  C VI      SC S FLT
Sbjct: 123 ALLKYMSDTDVECLVI-----GSCSSNFLT 147


>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
           family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
           EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
           repeat (6 copies,1 weak)
          Length = 757

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 397 QGPDRRVDRRFS-RTTVLRQLTYENRIEGLAGCL 495
           Q P   VD+R    ++++R+L+ E  +EG  GC+
Sbjct: 20  QDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCV 53


>At1g61390.1 68414.m06918 S-locus protein kinase, putative contains
           protein kinase domain, Pfam:PF00069; contains S-locus
           glycoprotein family domain, Pfam:PF00954
          Length = 831

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 602 PTHKVPSEQDDVLQNSLITYNDIRKCGVRSR 510
           PT  V S  DD   N LIT N+I +  ++ R
Sbjct: 801 PTFTVHSRDDDSTSNDLITVNEITQSVIQGR 831


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,855,560
Number of Sequences: 28952
Number of extensions: 341619
Number of successful extensions: 845
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)