Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30426
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    26   0.27 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    26   0.27 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   4.4  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    22   5.9  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.9  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   7.8  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 636 RTWLSPPLSSPYVRVLF-LLRLQSICL*NWELHCWD 532
           RT L PP+SSP+   L+ +   +S C   W  +CW+
Sbjct: 83  RTQLEPPISSPHCERLYGIFADESKCDVFW--NCWN 116


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 636 RTWLSPPLSSPYVRVLF-LLRLQSICL*NWELHCWD 532
           RT L PP+SSP+   L+ +   +S C   W  +CW+
Sbjct: 83  RTQLEPPISSPHCERLYGIFADESKCDVFW--NCWN 116


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 395 VGPNNRKPTDQSPV 354
           + P N  PTD SPV
Sbjct: 200 LSPRNGSPTDHSPV 213


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 359 PVHLQMSCGKIQQVTVDMRKAVFHF 285
           P  L+  C K  +   +M K V HF
Sbjct: 63  PDALKSDCAKCSEKQKEMTKKVIHF 87


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 106 DSVPYCFKLFLILSSFDRT 50
           D +PYC K+F + +   RT
Sbjct: 385 DEIPYCGKIFNLTTRQVRT 403


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -1

Query: 699 YYSLHLNCAM*LHYRVSLSPPRTWLSPPL 613
           YY  +L  A   H      PPRT L P L
Sbjct: 41  YYYQYLQNAALYHKLQFRGPPRTPLQPKL 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,762
Number of Sequences: 336
Number of extensions: 3555
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)