Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30426
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607...   112   2e-25
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293...    30   1.6  
01_05_0091 + 18048595-18050559                                         29   2.9  
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    28   8.8  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    28   8.8  

>02_04_0224 -
           21059328-21059888,21060388-21060462,21060715-21060798,
           21060866-21061183,21061511-21061722,21061766-21062030
          Length = 504

 Score =  112 bits (270), Expect = 2e-25
 Identities = 72/176 (40%), Positives = 96/176 (54%), Gaps = 10/176 (5%)
 Frame = +3

Query: 6   MMLHGRTRPTRVGQKVRSKEESIKNNLKQYGTESKYIDILVSDFSLPLWRDGVK--FDAM 179
           M   G     RV +  R  + +I +N +QY      + IL +D ++P WR G+K  FDA+
Sbjct: 265 MAFQGADIDIRVVRDGRGPDCNIWSNFEQYKLPEP-LCILRADNNVPPWRPGLKEVFDAI 323

Query: 180 ITDPPYGVREPTEKIGIER------NNYTLSEEHLTNHIPSKVEYGLPHIYSDLLNFAAR 341
           I DPPYGVR    K G  +        YT+ +E   +HIPS   Y L     DLL+ AAR
Sbjct: 324 ICDPPYGVRAGGRKSGGRKLIKGTVAPYTVPDEKRDSHIPSTAPYSLAECVHDLLHLAAR 383

Query: 342 HLEMNGRLVCWFPVIRAD--YQDEQLPSHPCLRLIANSEQILTKLTARRLLTYEKI 503
            L M GRLV +FPV+R D      + P HPC RL+A+ EQIL+   +R LLT  K+
Sbjct: 384 MLVMGGRLVFFFPVVREDGVANPAKYPEHPCFRLLASCEQILSMRYSRVLLTMVKV 439


>04_04_1104 -
           30928475-30928501,30929008-30929110,30929287-30929340,
           30929803-30929895,30930063-30930140,30930416-30930527,
           30930618-30930756,30930823-30930910,30930984-30931079,
           30931675-30931781,30931874-30932009,30932089-30932186,
           30932954-30933047,30933132-30933301,30933749-30933819,
           30936066-30936194,30936552-30936654,30936764-30936907,
           30937123-30937245,30937482-30937563,30939044-30939120,
           30939261-30939315,30939365-30939443,30939544-30939620,
           30939739-30939869,30939947-30940120,30940245-30940310,
           30940937-30941572
          Length = 1113

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 180 ITDPPYGVREPTEKIGIERNNYTLSEEHLTNHIPSKVEYGLPH 308
           ITDPP  + E    +  E +      E  T++ P K+  GLPH
Sbjct: 203 ITDPPEEINEVAIDVEREEDEGGTVGETFTDYRPPKLSLGLPH 245


>01_05_0091 + 18048595-18050559
          Length = 654

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 233 LYTNLLCWFANAVRWIGNHCVEFNSIPPERQRKITDQYINV--FRLRAILLQVILNTLFF 60
           L  +LLC   +A  W+    V F   P E    +    I++    +RA+ +Q +L  + F
Sbjct: 190 LGNHLLCPVLSAAAWVSGEYVNFTKDPVELVEALLQPRISLLPMSVRAVYIQAVLKVITF 249


>07_01_0389 -
           2915191-2915604,2915696-2915752,2915867-2915922,
           2916053-2916113,2916243-2916365,2916505-2916537,
           2916617-2916709,2916839-2916934,2917025-2917203,
           2917344-2917530,2918051-2918184,2918311-2918518,
           2918598-2918633,2918785-2919241,2919633-2919736,
           2920489-2920569,2920646-2920697,2920837-2920876,
           2920991-2921085,2921241-2921383,2921899-2922006,
           2922120-2922221,2922302-2922348,2922425-2922554,
           2923173-2923304,2923404-2923616,2923709-2923963,
           2924053-2924799
          Length = 1460

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -2

Query: 356 VHLQMSCGKIQQVTVD----MRKAVFHFRRYVICEVLLR*SVIVTLYTNLLCWFANAVRW 189
           V+  M+C   QQ   D    + K   +  ++V+  ++L    +  L  N     A  V W
Sbjct: 568 VNASMNCSSSQQPNYDEALELLKMAVNSCKFVMLPLILLYDELAVLLENSSLHSA-IVEW 626

Query: 188 IGNHCVEFNSI 156
           +G H  EF+++
Sbjct: 627 VGEHVAEFDTV 637


>02_01_0471 -
           3364215-3364912,3365511-3365742,3365827-3366198,
           3366324-3366449,3367056-3367262,3367399-3367492,
           3367575-3367621,3367705-3368157,3368261-3368560,
           3368656-3369114,3369189-3369410,3369659-3369890,
           3370051-3370422,3371210-3371322,3371682-3371903,
           3371977-3372180,3372308-3372572,3373123-3373311,
           3373441-3373768,3373843-3374248,3374339-3374648,
           3375677-3375837,3376825-3376998,3377265-3377609,
           3377713-3377754,3378585-3378734,3378847-3379002,
           3379088-3379540,3379651-3379966,3380402-3380839,
           3381475-3381697,3383538-3383852,3384033-3384095,
           3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 375 FPVIRADYQDEQLPSHPCLRLIANSEQILTKLTARRLL 488
           FP I+A   + +LP+H  +R++AN+ Q     T R++L
Sbjct: 483 FPCIKACASESELPNH--IRILANTLQHYILCTFRKVL 518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,687,853
Number of Sequences: 37544
Number of extensions: 389259
Number of successful extensions: 1033
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)