Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30426
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29273| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 3e-26
SB_17686| Best HMM Match : Ank (HMM E-Value=3.2e-29) 30 1.7
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_10767| Best HMM Match : DSPc (HMM E-Value=2.5e-07) 30 2.2
SB_59421| Best HMM Match : RVT_1 (HMM E-Value=0.18) 28 6.8
SB_893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 28 6.8
SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_45729| Best HMM Match : rve (HMM E-Value=5.8e-21) 28 9.0
SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12) 28 9.0
>SB_29273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 116 bits (278), Expect = 3e-26
Identities = 61/150 (40%), Positives = 90/150 (60%)
Frame = +3
Query: 54 RSKEESIKNNLKQYGTESKYIDILVSDFSLPLWRDGVKFDAMITDPPYGVREPTEKIGIE 233
++++E ++ N +Q G E ++D +++D S + R FDA+ITDPPYGVRE K+ +
Sbjct: 63 QARDEVMRTNFRQAGLEQLFVDAIIADASRSVLRATPIFDAIITDPPYGVREGVRKLKAD 122
Query: 234 RNNYTLSEEHLTNHIPSKVEYGLPHIYSDLLNFAARHLEMNGRLVCWFPVIRADYQDEQL 413
N+ + P+ L + LL+FA+ +L ++GRLV W PV R Y D L
Sbjct: 123 NNS-------VDTPYPAIKLGRLSDVIISLLHFASCYLTLHGRLVFWLPVHRQSYDDGLL 175
Query: 414 PSHPCLRLIANSEQILTKLTARRLLTYEKI 503
P HPCL L+ANSEQ L + +RRL+T EKI
Sbjct: 176 PLHPCLALVANSEQTLFRHISRRLITMEKI 205
>SB_17686| Best HMM Match : Ank (HMM E-Value=3.2e-29)
Length = 761
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 404 ILIVGPNN--RKPTDQSPVHLQMSCGKIQQVTVDMRKAVFHFRRYVICEVLLR 252
+L GPN R + Q+P+HL + G +Q V + + RR +C VLLR
Sbjct: 112 VLSFGPNASPRDSSQQTPLHLAAARGLVQHVELSL-----DTRREKVCSVLLR 159
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 228 IERNNYTLSEEHLTNHIPSKVEYGLPHIYSDLLNFAA 338
I +N + SEE L+N + YG+ HI +DLL +AA
Sbjct: 1201 ITKNGHPDSEEKLSNQ--QRFCYGVGHIQNDLLTYAA 1235
>SB_10767| Best HMM Match : DSPc (HMM E-Value=2.5e-07)
Length = 324
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = -2
Query: 689 YI*IALCDFITESRFHRRVRGYLLRSPLLTFASCFFSDCKVFVSKIGNSTAGINSYAGYV 510
YI + + D TESR +G L LL + C +G STA + + YV
Sbjct: 219 YIWLPMEDLSTESRIENLPQGVYLLHGLLNNGHRVYVHCN---GGVGRSTAIVCGFLMYV 275
Query: 509 ITYLLIRQQASCC 471
+ + L + Q + C
Sbjct: 276 LHWSLAKVQYNIC 288
>SB_59421| Best HMM Match : RVT_1 (HMM E-Value=0.18)
Length = 484
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 102 ESKYIDILVSDFSLPLWRDGVKFDAMITDPPYGVREPTE-KIGIERNNYTLSE 257
+S Y+D+ + ++PL RD +K+ + T P GVR T +G+ + L E
Sbjct: 155 QSPYLDVFYNHHTIPLSRDSLKYCGVAT-PFRGVRVYTRCAMGMPGSETALEE 206
>SB_893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +3
Query: 87 KQYGTESKYIDILVSDFSLPLWRDG--VKFDAMITDPPYGVREPTEKIGIERNNYTLSEE 260
K +G + D +V + R G V+ + +I+DP YG+R+P + E+ + +
Sbjct: 8 KSHGARIRRHDGIVEFLAKAATRKGLMVQCEPLISDPMYGLRKPDLVVAGEQQAFVIDVT 67
Query: 261 HLTNHIPSKVEYG 299
HI + G
Sbjct: 68 IQMRHIGAAAPSG 80
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 185 RSTVRRSRTNREDWYRA*QLHSI*GAPHKSHTFESGIRPSSYL 313
R ++RRSR N +A G H S FE+G+RP L
Sbjct: 534 RHSIRRSRRNTTSPTQAAGPSPEHGVDHGSSAFEAGLRPGDLL 576
>SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1744
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 45 QKVRSKEESIKNNLKQYGTESKYI--DILVSDFSLPLWRDGVKFDAMITDPPYGVREPTE 218
Q++R ++++ K +KQY +Y+ L ++ + RD K +D PY R P
Sbjct: 1615 QEIRQRDQAAKEKMKQYADNKRYVKPSTLAEGDTVLVKRDESK---RKSDTPYDAR-PRM 1670
Query: 219 KIGIERNNYTLSEE 260
+G + + T +E
Sbjct: 1671 IVGKKGSMVTAQDE 1684
>SB_45729| Best HMM Match : rve (HMM E-Value=5.8e-21)
Length = 611
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 45 QKVRSKEESIKNNLKQYGTESKYI--DILVSDFSLPLWRDGVKFDAMITDPPYGVREPTE 218
Q++R ++++ K +KQY +Y+ L ++ + RD K +D PY R P
Sbjct: 490 QEIRQRDQAAKEKMKQYADNKRYVKPSTLAKGDTVLVKRDESK---RKSDTPYDAR-PRM 545
Query: 219 KIGIERNNYTLSEE 260
+G + + T +E
Sbjct: 546 IVGKKGSMVTAQDE 559
>SB_14633| Best HMM Match : LRR_1 (HMM E-Value=3.4e-12)
Length = 446
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 209 FANAVRWIGNHCVEFNSIPPERQRKITDQYINVF 108
++N WI CV +IPP+ +R + Q + VF
Sbjct: 109 YSNVELWIEILCVCLETIPPQLRRLVNLQTLEVF 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,580,709
Number of Sequences: 59808
Number of extensions: 464487
Number of successful extensions: 1293
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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