Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30426
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26410.1 68416.m03293 expressed protein                            117   9e-27
At4g00750.1 68417.m00102 dehydration-responsive family protein s...    29   3.2  
At3g52250.1 68416.m05742 myb family transcription factor contain...    29   4.2  
At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g281...    28   7.3  
At1g77000.1 68414.m08967 F-box family protein similar to GP|2155...    28   7.3  
At1g21410.1 68414.m02679 F-box family protein  similar to SKP1 i...    28   7.3  
At4g35880.1 68417.m05095 aspartyl protease family protein contai...    27   9.7  

>At3g26410.1 68416.m03293 expressed protein
          Length = 477

 Score =  117 bits (281), Expect = 9e-27
 Identities = 72/174 (41%), Positives = 99/174 (56%), Gaps = 9/174 (5%)
 Frame = +3

Query: 9   MLHGRTRPTRVGQKVRSKEESIKNNLKQYGTESKYIDILVSDFSLPLWRDGVK--FDAMI 182
           M  G     RV +  R  + ++ +N KQYG     + +L  D ++P WR G+K  FDA+I
Sbjct: 242 MTMGADIDIRVVRDGRGPDCNVWSNFKQYGLPMP-VALLRMDNNVPPWRSGLKEIFDAII 300

Query: 183 TDPPYGVREPTEKIGIER------NNYTLSEEHLTNHIPSKVEYGLPHIYSDLLNFAARH 344
            DPPYGVR    K G  +      + YT+ ++  T+HIPS   Y L     DLL+ AAR 
Sbjct: 301 CDPPYGVRAGGRKSGGRKILRGTVDPYTVPDDKRTDHIPSTGAYSLVECVHDLLHLAARM 360

Query: 345 LEMNGRLVCWFPVIRADYQDE-QLPSHPCLRLIANSEQILTKLTARRLLTYEKI 503
           L M GRLV +FPV+R +   E + P HPC +L+A SEQIL+   +R LLT  K+
Sbjct: 361 LVMKGRLVFFFPVLRDETGSEVKFPEHPCFKLVAVSEQILSSRYSRVLLTMVKV 414


>At4g00750.1 68417.m00102 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 633

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 249 LSEEHLTNHIPSKVEYGLPHIYSDLLNFAARH 344
           +S   ++NH  + V    PH  + +LNFA+RH
Sbjct: 48  ISRSSISNHELTSVPCTFPHQTTPILNFASRH 79


>At3g52250.1 68416.m05742 myb family transcription factor contains
            Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 168  FDAMITDPPYGVREPTEKIGIERNNYTLSEEHLTNH 275
            F  ++T    G+++     GI R++ TLS +H T H
Sbjct: 1542 FGTVLTTDENGIKQKHNPCGIVRSSSTLSRDHDTRH 1577


>At3g42530.1 68416.m04410 Ulp1 protease family similar to At5g28170,
           At1g35110, At1g44880, At4g19320, At5g36020, At4g03970,
           At3g43010, At2g10350; contains Pfam profile PF02902:
           Ulp1 protease family, C-terminal catalytic domain
          Length = 889

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 224 NLLCWFANAVRWIGNHCVEFNSI--PPERQRKITDQYINVFR 105
           + L   A    W+    +E  +   PPE   KITD++++ FR
Sbjct: 825 SFLLSLAKPTNWVSTLFLEIQASDNPPENMAKITDKHVDSFR 866


>At1g77000.1 68414.m08967 F-box family protein similar to
           GP|21554029| F-box protein AtFBL5 from [Arabidopsis
           thaliana]; similar to F-box protein FBL2 GI:6063090 from
           [Homo sapiens]
          Length = 360

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 203 NAVRWIGNHCVEFNSIPPERQRKITD 126
           NAV  I NHC E   +   +  KITD
Sbjct: 107 NAVEAIANHCHELQDLDLSKSSKITD 132


>At1g21410.1 68414.m02679 F-box family protein  similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 360

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 203 NAVRWIGNHCVEFNSIPPERQRKITDQ 123
           NAV  I NHC E   +   +  KITD+
Sbjct: 107 NAVEAIANHCHELQELDLSKSLKITDR 133


>At4g35880.1 68417.m05095 aspartyl protease family protein contains
           Eukaryotic and viral aspartyl proteases active site,
           PROSITE:PS00141
          Length = 524

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 568 YLSLKLGTPLLGSTVTLDTSSHIF 497
           Y ++KLGTP +   V LDT S +F
Sbjct: 108 YTTVKLGTPGMRFMVALDTGSDLF 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,924,208
Number of Sequences: 28952
Number of extensions: 310174
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)