Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30425
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    27   2.1  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    27   3.7  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    26   4.8  

>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 234 EIHTHKKYIIILNLALVGSTLYIHIIVS 317
           E+H+H  Y++ LN A++G + Y  + V+
Sbjct: 559 ELHSHGTYLVYLNGAILGISRYPSLFVA 586


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 145 KLPIGNLPYINLLYVVCLSFIGTPNPTNNMKF 240
           KLP   +P ++ L  +C       NP+ N +F
Sbjct: 823 KLPRNQIPELDYLTQICFELFERTNPSGNKEF 854


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 538 PAVGSLNSSELHL--YTYIQKIVLCCSWYTTPNLVHTKTKCSQQNSSRGRDKR 690
           P V +L  S  H+   + + +++  C WY +P+     +K  Q NSS   +++
Sbjct: 749 PVVQNLQPSTAHVDPESDLGRVIKICDWYQSPSSDVLLSKPLQLNSSEEMEQQ 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,876
Number of Sequences: 5004
Number of extensions: 65572
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)