Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30425
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30258| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_5425| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.2  
SB_17004| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_30258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 523 VVFHGPAVGSLNSSELHLYTYIQKIVLCCSWYTTPNLVHTK-TKCSQQNSSRGRD 684
           V+ H   VG    +   L+T +Q  +L C W+    L+  K  KC +++    R+
Sbjct: 136 VIHHRAKVGRPEETRNVLFTSLQSRILFCRWFLRLVLMRKKGVKCKRESRDVTRE 190


>SB_5425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 39  KLAKFFFKVINEKYKRAHSKTYPYLNYNVLNQCMEEITDRK 161
           KLA   +K+ N KYK A++K Y    Y + N    +I  RK
Sbjct: 233 KLANAKYKLANAKYKLANAK-YKLAKYKLANANKSKIQTRK 272


>SB_17004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -1

Query: 505 FFLIIK*L---INCDQCKWFVFDFIGKCSFDSPLNIHPI*DLDIG 380
           F ++I+ L   I  + C  F+  + G+   D P N+HP  D  +G
Sbjct: 11  FVIVIRSLLVRIRLEGCFTFIAVYFGQGYVDCPFNVHPSFDSSVG 55


>SB_48151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +2

Query: 617 TPHQILFTPKQNAASKILVVVVINAKPNEMLPIIQNK 727
           +P + +F+PK   A + +V ++IN++   +L + Q K
Sbjct: 474 SPREEIFSPKAQLAIEAIVNMIINSQVQTLLRVFQYK 510


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 322  FRLTIICMYKVEPTRAKFSIIIYFLCV*ISYYLLDLV 212
            +RL I+C+  V  +R +  I+   L V +S Y LD+V
Sbjct: 915  YRLDIVCVSLVLVSRYRLDIVRVSLLVLVSRYRLDIV 951


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,202,555
Number of Sequences: 59808
Number of extensions: 429164
Number of successful extensions: 1103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)