Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30424
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.35 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   2.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   5.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.5  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   9.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 39  GNWRSRRHRCWGSRSDTEGRRQAYRSIRC 125
           GN  S RH  W S    +G  QA   ++C
Sbjct: 352 GNSASNRHSAWQSHWLNKGAEQAKNVLKC 380


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 476 AAYTGKRLAWNNP 438
           A  TG  L+WNNP
Sbjct: 170 AGRTGNSLSWNNP 182


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -3

Query: 133 LNPHLMLRYAWRLPSVSLRLPQHRCLRLRQLPEQLFL 23
           L  H+ML   W     + R P    +   Q PE L +
Sbjct: 278 LTTHVMLLSDWMHEDATERFPGRLAVNTGQDPESLLI 314



 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 434 IDEILIIVPPLPPWS 390
           IDEI    PP PP S
Sbjct: 528 IDEISFTFPPSPPLS 542


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -3

Query: 133 LNPHLMLRYAWRLPSVSLRLPQHRCLRLRQLPEQLFL 23
           L  H+ML   W     + R P    +   Q PE L +
Sbjct: 278 LTTHVMLLSDWMHEDATERFPGRLAVNTGQDPESLLI 314


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +1

Query: 121 DVDSVNGQILEDELNNNYKGNKVKFYKCDVTSNDLETVYDNVIK 252
           DVD   G    +   + Y    ++    D ++ +L+   DN++K
Sbjct: 94  DVDLFRGSSTPESPEHYYNQKTLQANNNDASNGNLKFSIDNILK 137


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 202 ICRTSLCFLYNCCLV 158
           I   SL FL+NC L+
Sbjct: 240 ISLVSLIFLFNCTLI 254


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.135    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,825
Number of Sequences: 336
Number of extensions: 3708
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)