Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30423
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    28   1.1  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    27   2.0  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   4.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   4.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   6.1  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   6.1  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   8.1  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 551 QRLPRPSNRNALLFHGRNRQGGGTSRADSQLTRGPTTSN 435
           ++ P P + N+ +   RNR+GG  S  D  LT  PT S+
Sbjct: 246 RKKPSPLSPNSSI---RNREGGNGSYFDGPLTASPTPSS 281


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 541 PALQTETHYCFTAEIGRAVVPPVPTHNSQEVLPPVIISNNSVP 413
           P L ++T+             P+P+H SQ  +PP  +S++SVP
Sbjct: 254 PLLGSQTNLQLAPSFAAPQAHPLPSHLSQSNVPPQ-LSHSSVP 295


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 297 KRRLKNSPRNEQFFAYGLLYQCIAVSVERIVRLLG*EVSYFYC 169
           KR  K++P  ++ +AY  L   + V+ ER+   L  EV +  C
Sbjct: 177 KRNNKDAPLGKKTYAYIELSDKVIVTKERLYNTLAHEVCHLAC 219


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 253  LWSIIPVYCSIGRAYCKTSWIGSVLFLL 170
            +W+ +P  C I R YC T  +G  +F L
Sbjct: 2358 VWTNVPD-CDISRFYCYTKMLGEWMFTL 2384


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -3

Query: 502 EIGRAVVPPVPTHNSQEVLPPVIISNNSVPELNISGKSRSRRVKEPHKAPE 350
           E G  + PP   H   E +PP    ++ + E       R    KE HK P+
Sbjct: 319 EPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKGPK 369


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 532 QTETHYCFTAEIGRAVVPPVPTHNSQEVLPPVIISNNS 419
           +T TH   +  I   V PP  +HNS     P   S N+
Sbjct: 55  ETSTHSVTSTNITSIVPPPSTSHNSTTTTVPPTTSMNT 92


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +2

Query: 254 AKNCSFLGEFFSRLLGEEIEWYSS----RSVISNLRL-GSLMRLFNSTATA 391
           A  C++     SRL   E+EW+ S    +S I N  L  SL R F++ A+A
Sbjct: 194 ALRCAYYILGSSRLRNSELEWFKSFLFKKSSIDNSLLHSSLGRCFSALASA 244


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 660 LLQSPSGVKWLLEPIDIYNVNAPPTLRYKF*GLTIVTTAAPP 535
           LL+SPSG++ +L     Y+ N+   L + F  +T+   A PP
Sbjct: 516 LLESPSGIRSILASERPYDENSKGFLDWTF--MTVQHWAEPP 555


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = -3

Query: 541 PALQTETHYCFTAEIGRAVVPPVPTHNSQEVLPPVIISNNSVPELNISGKSRSRR 377
           P+ Q   +      I    + P P      V P   I+N S+PE N +  S S +
Sbjct: 545 PSQQNNNNSNTQHSINLHTIVPSPYEPPLSVTPSTAITNLSIPESNRTNSSASSK 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,944,348
Number of Sequences: 5004
Number of extensions: 60566
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)