Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30423
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955     29   3.6  
10_02_0139 + 5753426-5754841,5755566-5755655,5756011-5756379,575...    28   8.4  
04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202           28   8.4  

>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
          Length = 286

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -3

Query: 619 HRHLQRKCATHLEIQVLRSHYSYNGCPA--LQTETHYCFTAEIGRAVVPPVPTHNSQEVL 446
           HR   +    HL  ++ R   ++ G P+  L+T  H        ++V  P P+H S   L
Sbjct: 19  HRVTHQTIENHLTHEI-RRQCTHAGSPSTRLRTRGHRPKVTHASKSVAAPFPSHASLRNL 77

Query: 445 PPVIISNNSVP 413
            P+I +  S P
Sbjct: 78  HPLIAAYPSRP 88


>10_02_0139 +
           5753426-5754841,5755566-5755655,5756011-5756379,
           5756796-5756982,5757567-5757631
          Length = 708

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 415 PELNISGKSRSRRVKEPHKAPEP 347
           P  N+ G      VKEPH+AP P
Sbjct: 344 PNTNVHGMFSMMSVKEPHQAPMP 366


>04_01_0541 - 6998030-6998521,7000666-7000732,7001057-7001202
          Length = 234

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 536 PSNRNALLFHGRNRQGGGTSRADSQLTRGPT 444
           P  R+    HGR    GG SR  +Q  RG T
Sbjct: 109 PPERSPAKPHGRKEGSGGASRQPAQAARGVT 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,829,745
Number of Sequences: 37544
Number of extensions: 423674
Number of successful extensions: 921
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)