Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30423
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15756| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)                29   2.8  
SB_1271| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  

>SB_15756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 254 AKNCSFLGEFFSRLLGEEIEWYSSRSVISNLRLGSLMRLFNST 382
           A N   LG+    +LG ++  +SS+ V    RLG L+R++ ST
Sbjct: 199 ATNAQLLGDMDGFILGSKVAEWSSKGV----RLGQLLRMYYST 237


>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 828

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -3

Query: 481 PPV---PTHNSQEVLPPVIISNNSVPELN-ISGKSRSRRVKEPHKAPEPQVA 338
           PPV   P     + L  V IS+   PE N ++ K   + + +P KAPEP++A
Sbjct: 504 PPVSISPAEPKVKFLDSVKISSYKPPEPNPVAPKEPPKPILKPTKAPEPKLA 555


>SB_1271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 278 EFFSRLLGEEIEWYSSRSVISNLR----LGSLMRLFNSTATALPRNI*FRHGIITYYYWW 445
           +FFSR    ++ +  S  + S  R    + S  R ++STA+ + + + F H  I  Y +W
Sbjct: 16  KFFSRFTDRKMAFSHSTYIASKTRKYRNIKSKNRQYSSTASKIRKYLYFLHTTIQIYLFW 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,180,187
Number of Sequences: 59808
Number of extensions: 464831
Number of successful extensions: 1690
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1688
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)