Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30423
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    28   5.7  

>Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical
           protein W05B5.2 protein.
          Length = 362

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 174 KNKTLPIQEVLQYALPILQYTGIIDHRQKTAHFSANSLVV 293
           KN  L +Q +  + LP+L  + +  H  +T HFSAN L V
Sbjct: 211 KNYQL-LQTIFSFVLPLLVISILCLHMVRTLHFSANYLTV 249


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 657 LQSPSGVKWLLEPIDIYNVNAPPTLRYKF*GLTIVTTAAPP 535
           + +P   K  + P  +    APPT+R      T+ TT APP
Sbjct: 1   MPTPVSTKKTIAPSTMKTTVAPPTMRTTMAPTTMKTTVAPP 41


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 484 VPPVPTHNSQEVLPPVIISNNSVPE 410
           +P VP+ ++  V+P +++ N  VPE
Sbjct: 73  LPEVPSSSASFVIPQIVVDNEEVPE 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,466,852
Number of Sequences: 27780
Number of extensions: 347417
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)