Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30423
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16270.1 68414.m01948 protein kinase family protein contains ...    29   2.3  
At3g09690.1 68416.m01148 hydrolase, alpha/beta fold family prote...    28   5.3  
At2g07691.1 68415.m00941 hypothetical protein                          28   7.0  
At1g61850.1 68414.m06979 patatin family protein similar to membr...    28   7.0  
At5g36800.1 68418.m04409 expressed protein                             27   9.3  
At5g36710.1 68418.m04393 expressed protein                             27   9.3  
At4g22810.1 68417.m03291 DNA-binding protein-related contains Pf...    27   9.3  

>At1g16270.1 68414.m01948 protein kinase family protein contains
           PF|00069 Eukaryotic protein kinase domain. ESTs
           gb|H37741, gb|T43005 and gb|AI100340 come from this gene
          Length = 1147

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 466 HNSQEVLPPVIISNNSVPELNISGKSRSRRVKEPHKAPEPQVADY 332
           HNS     P+       P   I+ ++   +V+EP+  PE +V DY
Sbjct: 435 HNSSNYSIPIPFPGQPYPHPGITQQNAPVQVEEPNIKPETKVRDY 479


>At3g09690.1 68416.m01148 hydrolase, alpha/beta fold family protein
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family
          Length = 527

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -3

Query: 613 HLQRKCATHLEIQVLRSHYSYNGCPALQTETHYCFTAEIGRAVVPPVPTHNSQEVLPPVI 434
           H+Q+KC T+  +  L S YS + C  +           +   V PP  T     V+P   
Sbjct: 404 HMQKKCRTNGVLSWLMSMYSESECELIGFRKPIHIWQGMDDRVTPPSVTDYISRVIPEAT 463

Query: 433 I 431
           +
Sbjct: 464 V 464


>At2g07691.1 68415.m00941 hypothetical protein
          Length = 136

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 327 LDEYHSISSPKRRLKNSPRNEQFFAYGLLYQCIAVSVERIV 205
           L ++  I       K S  ++Q F +GLL++C+ ++  R V
Sbjct: 57  LSKFFEIEICAHSWKRSTFDQQVFKFGLLWECVDIARSRTV 97


>At1g61850.1 68414.m06979 patatin family protein similar to
            membrane-associated calcium-independent phospholipase A2
            gamma; IPLA2 gamma [Homo sapiens] GI:8453174; contains
            Patatin domain PF01734, PF00514:
            Armadillo/beta-catenin-like repeat
          Length = 1265

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -3

Query: 511  FTAEIGRAVVPPVPTHNSQEVLPPVIISNNSVPELNISGKSRSRRVKEPHKAPEPQVADY 332
            FT+ +    +PP P   + E+ P      + VP L++ G    + V  P  +P  Q   Y
Sbjct: 912  FTSPLITGSLPPSPLLFTPELGPQKFNRIDMVPPLSLDGGHVGKTVMSPPSSPPRQRQLY 971

Query: 331  *PRR 320
             P R
Sbjct: 972  LPLR 975


>At5g36800.1 68418.m04409 expressed protein
          Length = 183

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 348 GSGALCGSLTLRLRLFPEIFSSGTELLLIIT 440
           GS + C  LT+ LRLFP +  SG  L+ + T
Sbjct: 23  GSASSCIFLTISLRLFPSL--SGLSLIFLYT 51


>At5g36710.1 68418.m04393 expressed protein
          Length = 183

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 348 GSGALCGSLTLRLRLFPEIFSSGTELLLIIT 440
           GS + C  LT+ LRLFP +  SG  L+ + T
Sbjct: 23  GSASSCIFLTISLRLFPSL--SGLSLIFLYT 51


>At4g22810.1 68417.m03291 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 324

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 509 HGRNRQGGGTSRADSQLTRGP 447
           HG + +GGG S  D Q+TR P
Sbjct: 87  HGGSGEGGGGSGGDHQMTRRP 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,585,843
Number of Sequences: 28952
Number of extensions: 331144
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)