Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30422
         (607 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    46   5e-04
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    45   0.002
UniRef50_A2XG27 Cluster: Putative uncharacterized protein; n=2; ...    33   6.9  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 46.4 bits (105), Expect = 5e-04
 Identities = 30/75 (40%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -1

Query: 358 PLSFSPEILSGSRFRSGGRFCEAQLLLGFVLAXXXXXXXXXXXXXXGYAEIASQGSQRR* 179
           P+ F       SRFRS GRFCEA LLLG VLA                A IA +    R 
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYELPNRPRVAGIAFRLPANRY 133

Query: 178 EKKKNCIE-NGTPRR 137
           E+K  C + N  P+R
Sbjct: 134 EEKTVCSQINANPKR 148


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 44.8 bits (101), Expect = 0.002
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = -1

Query: 397 TKGSTSELTHRHSPLSFSPEILSGSRFRSGGRF 299
           T G ++E  HR  PLSFSP++LSGSRFR+G  +
Sbjct: 383 TTGHSTENEHRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_A2XG27 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 432

 Score = 32.7 bits (71), Expect = 6.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 307 HRIG-NATH*ESPARNSVGCVCGLIRSSSPSYRESFNKK 420
           HR G +++   +P R SVGC+ GL+R  SP +R    K+
Sbjct: 8   HRHGASSSSSGAPRRRSVGCMAGLLRLLSPYHRSHHRKR 46


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 529,421,072
Number of Sequences: 1657284
Number of extensions: 9148409
Number of successful extensions: 22204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22201
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43147568152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)