Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30422
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    29   0.40 
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c...    28   1.2  

>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 343 ARNSVGCVCGLIRSSSPSYRESFNK 417
           A NS    CG+   S PSY E+FNK
Sbjct: 282 APNSYNAGCGVENPSGPSYGEAFNK 306


>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 285 SCASQNLPPDRKRDPLRISGEKLSGLCLWVNSLVEPFVSRVF 410
           S    NLP D +      + EK +  C+W+NS V+ FV + F
Sbjct: 91  SFLKNNLPVDTESSSEAFTIEKDNNSCVWLNS-VKSFVEKQF 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,267
Number of Sequences: 5004
Number of extensions: 40520
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)