Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30422
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_24737| Best HMM Match : KID (HMM E-Value=0.096)                     28   6.7  
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)                       27   8.9  

>SB_13193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 409 KTRDTKGSTSELTHRHSPLSFSPEILSGSRFRS 311
           +  +T   + ELTH +SP   S E L   RFRS
Sbjct: 234 EAEETSSESFELTHENSPRHISVEDLPKGRFRS 266


>SB_24737| Best HMM Match : KID (HMM E-Value=0.096)
          Length = 636

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 409 KTRDTKGSTSELTHRHSPLSFSPEILSGSRFR 314
           +  DTK  TS   H +S   ++   LSG+RFR
Sbjct: 19  RKNDTKTITSSTAHAYSRAKWTGSELSGNRFR 50


>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2353

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 468 LQCPLFGYTIIVTIIRLF 415
           L+CP+ GY +I T+I+ F
Sbjct: 723 LECPIIGYNVIETVIKDF 740


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,589,517
Number of Sequences: 59808
Number of extensions: 299617
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)