Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30422
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ...    29   3.4  
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ...    29   3.4  
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou...    29   3.4  
U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform b
           protein.
          Length = 1047

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 152 WYTATYRNAIYEYETTL*IKTKP*SFLLSKTIIIIGNVFSFFFITKYTQT 3
           +Y  TYR   Y Y T     T     L+++ +  +GNVFSF  I    QT
Sbjct: 510 YYIFTYREDPYRY-TVRTYWTSEEPMLVAEALFAVGNVFSFARIIYLFQT 558


>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform a
           protein.
          Length = 1027

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 152 WYTATYRNAIYEYETTL*IKTKP*SFLLSKTIIIIGNVFSFFFITKYTQT 3
           +Y  TYR   Y Y T     T     L+++ +  +GNVFSF  I    QT
Sbjct: 490 YYIFTYREDPYRY-TVRTYWTSEEPMLVAEALFAVGNVFSFARIIYLFQT 538


>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
           cation channel proteinprotein.
          Length = 1027

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 152 WYTATYRNAIYEYETTL*IKTKP*SFLLSKTIIIIGNVFSFFFITKYTQT 3
           +Y  TYR   Y Y T     T     L+++ +  +GNVFSF  I    QT
Sbjct: 490 YYIFTYREDPYRY-TVRTYWTSEEPMLVAEALFAVGNVFSFARIIYLFQT 538


>U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical
           protein R151.1 protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 554 NSKCVNYFPAFVTSPVLF*TNCDKIPSSFYSAHCSVI 444
           NS C  +FP + TS +L       IPS+F + H  VI
Sbjct: 46  NSTCQKHFPGYFTSSILPDERSLTIPSAF-NGHALVI 81


>Z70311-4|CAA94373.1|  541|Caenorhabditis elegans Hypothetical
           protein T25B9.5 protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -1

Query: 145 PRRIGMLSMNMKR---HYELKLNLDLFCCQK 62
           P +   +S+N K+   HY+L  N D +CC+K
Sbjct: 100 PNKFLCISVNWKKKIFHYQLDFNEDGWCCKK 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,439,516
Number of Sequences: 27780
Number of extensions: 227159
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)