Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30422
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20480.1 68418.m02434 leucine-rich repeat transmembrane prote...    28   4.2  
At4g20830.2 68417.m03022 FAD-binding domain-containing protein s...    28   4.2  
At4g20830.1 68417.m03023 FAD-binding domain-containing protein s...    28   4.2  
At2g01500.1 68415.m00073 homeobox-leucine zipper transcription f...    28   4.2  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    28   5.5  

>At5g20480.1 68418.m02434 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21, Oryza sativa,
           PIR:A57676
          Length = 1031

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 282 KSCASQNLPPDRKRDPLRISGEKLSGLCLWVNSLV 386
           K C  Q  P  RKR PL +  + +SG+C+ + SL+
Sbjct: 630 KPCIVQASP--RKRKPLSVRKKVVSGICIGIASLL 662


>At4g20830.2 68417.m03022 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 540

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +2

Query: 290 CFAESTTGSETRPTENLRRETQWAVSVG*FARRALRIASLSTKSLIIVTIIV*PNN 457
           CF++ T   +++ T+N+  +T  A S     R  +R A  +T S +  TII+ P +
Sbjct: 42  CFSDKTKSPQSQITDNVFSQTNPAFSS--VLRAYIRNARFNTSSTLKPTIIITPRS 95


>At4g20830.1 68417.m03023 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 570

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +2

Query: 290 CFAESTTGSETRPTENLRRETQWAVSVG*FARRALRIASLSTKSLIIVTIIV*PNN 457
           CF++ T   +++ T+N+  +T  A S     R  +R A  +T S +  TII+ P +
Sbjct: 42  CFSDKTKSPQSQITDNVFSQTNPAFSS--VLRAYIRNARFNTSSTLKPTIIITPRS 95


>At2g01500.1 68415.m00073 homeobox-leucine zipper transcription
           factor family protein similar to wuschel protein
           (GI:22087128) [Arabidopsis thaliana]
          Length = 271

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 560 IRNSKCVNYFPAFVTSPVLF*TNCD 486
           I N+  +NY P   T P L  T+CD
Sbjct: 4   ISNNNLINYLPLSTTQPPLLLTHCD 28


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 392 GLDERINPQTQPTEFLAGDSQW 327
           G D++ +P   PT+F +G+S W
Sbjct: 391 GHDDKAHPPIHPTKFSSGESNW 412


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,536,796
Number of Sequences: 28952
Number of extensions: 205822
Number of successful extensions: 529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)