Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30419
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.30 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.69 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.6  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.9  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   6.4  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   6.4  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.5  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    25   8.5  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 38/146 (26%), Positives = 68/146 (46%)
 Frame = -3

Query: 650 VLSLLT*KSRSLVSRSSNLELHAPLK*MALTRTPAVAELSESGLTKSLMRLLVFSSTQSL 471
           V S+L+  + S  S S ++   +     +   T + + +S S  + S +      ST SL
Sbjct: 576 VSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSL 635

Query: 470 IDLAATVFFEKSIFWTSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLA 291
           +  ++++    S   +S + T   +++          TY+   I SS+ L+   S L+++
Sbjct: 636 MISSSSIISGSSSILSSSISTIPISSS--------LSTYSSSVIPSSSTLVSSSSSLIVS 687

Query: 290 NSVRIASSSGKPIAFKSSSWVSPSEA 213
           +S  +ASSS  PI   SSS VS   A
Sbjct: 688 SS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -3

Query: 425 TSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 246
           TS + TSL ++A               ++ SS+ +    S +L ++S    SSS      
Sbjct: 7   TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66

Query: 245 KSSSWVSPSEA 213
            SSS+ SP+ +
Sbjct: 67  SSSSFTSPASS 77


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 289 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 384
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 559 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 654
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 3   DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 101
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 448 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 537
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 485  STQSLIDLAATVFFEKSIFWTSE 417
            STQ+ +D   T FFE  IF+T +
Sbjct: 1123 STQNGLDATETSFFELQIFFTQD 1145


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
 Frame = +1

Query: 289 FASKSRDLRSIKGVELKMANKV--YVHDGGKLD--ENFAVVSRDVFNSDVQNIDFSKNTV 456
           F S  +   S++ VE   A K+  +++ G  ++   N  V +R        +  FS+   
Sbjct: 82  FRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCRNCGVANRFTIIKPKSDARFSQGLC 141

Query: 457 AAKSINDWVEENTNNRIKDLVNPDSLSSATAGVLVNAIYFKGAWSSKFDERLTSDRD 627
            A +  ++ + NT       +  + L +     L+  + F+G+ SSKF E + S+ D
Sbjct: 142 TACTFQNYPDLNTCE-----ICGNQLKNVDRNQLIQ-LSFRGSGSSKFYEAIKSETD 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,911
Number of Sequences: 5004
Number of extensions: 57592
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)