Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30418
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    83   4e-17
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    26   4.5  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       25   7.9  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    25   7.9  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        25   7.9  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    25   7.9  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   7.9  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   7.9  

>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 6/199 (3%)
 Frame = +2

Query: 113 SVEDFNKFLDSFDHVLSDCDGVIWT-QNPLPRVGEFFKQMKKRGKTVNFVSNNSIRSRAN 289
           S +++ +F+D FD  L DCDGV+W+   P+P V +  K ++  GK + FVSNNS +SR  
Sbjct: 7   SPKEYKEFIDKFDVFLFDCDGVLWSGSKPIPGVTDTMKLLRSLGKQIIFVSNNSTKSRET 66

Query: 290 YEAQFKAAGIDNGFESLIIPSIAVAEYLKSA---TFNKTVYCVTCTETKRVLEAHGFKCK 460
           Y  +    GI    E +   + + A Y+K       +K V+ +     +  L+  G    
Sbjct: 67  YMNKINEHGIAAKLEEIYPSAYSSATYVKKVLKLPADKKVFVLGEAGIEDELDRVGVAHI 126

Query: 461 EG--PDLGPEYYGEYIQYLEDDEEIGAVVFDSDFRINLPKMYRAITYLKRPEVLFINGAT 634
            G  P L      E ++ +  D  +GAV+   D  +   K   A  YL+ P   F+    
Sbjct: 127 GGTDPSLRRALASEDVEKIGPDPSVGAVLCGMDMHVTYLKYCMAFQYLQDPNCAFLLTNQ 186

Query: 635 DRSVPMKPGLLALGTGVFA 691
           D + P   G    G+G  +
Sbjct: 187 DSTFPTN-GKFLPGSGAIS 204


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +2

Query: 86   TESKHLLDLSVEDFNKFLDSFDHVLSDCDGVIWTQNPLPRVGEFFKQMKKRGKTVNFVSN 265
            TES   L   ++  NK++D     L + +  +W  N    + E  K ++   K +N V  
Sbjct: 987  TESIATLKTELQSLNKYVDEHKSRLREFENALWDIN--SSIDELVKFIEFESKQMNSVKA 1044

Query: 266  NSIRSRANYEAQ 301
              I      + Q
Sbjct: 1045 ERIELENQIQEQ 1056


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 132 LLKSSTLKSNKCLDSVPIMFI*HFETFFLYTIILKHVCT*PYC 4
           ++K+S+L  N C D VP +FI        Y + +K +    YC
Sbjct: 14  IMKNSSLVQNICFDRVP-LFIPRLSLTVKYCLAVKLLIYLLYC 55


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 132 LLKSSTLKSNKCLDSVPIMFI*HFETFFLYTIILKHVCT*PYC 4
           ++K+S+L  N C D VP +FI        Y + +K +    YC
Sbjct: 14  IMKNSSLVQNICFDRVP-LFIPRLSLTVKYCLAVKLLIYLLYC 55


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 132 LLKSSTLKSNKCLDSVPIMFI*HFETFFLYTIILKHVCT*PYC 4
           ++K+S+L  N C D VP +FI        Y + +K +    YC
Sbjct: 14  IMKNSSLVQNICFDRVP-LFIPRLSLTVKYCLAVKLLIYLLYC 55


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 562 YPKIAVKNDGSYLF 521
           YP +A K +GSYLF
Sbjct: 54  YPVVAAKGEGSYLF 67


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 421 DQKSLRSSRIQMQGRSRSRAR 483
           D +S R SR +  GRSRSR R
Sbjct: 195 DHRSRRRSRSRRPGRSRSRRR 215


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 132 LLKSSTLKSNKCLDSVPIMFI*HFETFFLYTIILKHVCT*PYC 4
           ++K+S+L  N C D VP +FI        Y + +K +    YC
Sbjct: 14  IMKNSSLVQNICFDRVP-LFIPRLSLTVKYCLAVKLLIYLLYC 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,921
Number of Sequences: 5004
Number of extensions: 54725
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)