Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30418
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039... 80 1e-15
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448... 75 7e-14
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 51 1e-06
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318... 29 2.7
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 29 3.6
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 29 3.6
07_01_0065 + 466416-467465 28 8.3
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470... 28 8.3
06_01_0141 - 1077398-1078054 28 8.3
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331... 28 8.3
>04_04_0337 -
24503417-24503523,24503612-24503715,24503828-24503927,
24504009-24504106,24504403-24504455,24504508-24504588,
24504668-24504739,24504882-24504953,24505045-24505137,
24505240-24505307,24505388-24505658
Length = 372
Score = 80.2 bits (189), Expect = 1e-15
Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 12/187 (6%)
Frame = +2
Query: 116 VEDFNKFLDSFDHVLSDCDGVIWTQNPL-PRVGEFFKQMKKRGKTVNFVSNNSIRSRANY 292
+E+ + +DS + + DCDGVIW + L V E ++ +GK + FV+NNS +SR Y
Sbjct: 72 LENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQY 131
Query: 293 EAQFKAAGIDNGFESLIIPSIAVAEYLKSATF--NKTVYCVTCTETKRVLEAHGFKCKEG 466
+F+ G++ E + S A A YL+S F +K VY + + LE GF+ G
Sbjct: 132 GKKFETLGLNVNEEEIFASSFAAAAYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGG 191
Query: 467 PDLGPEYY----GEYIQYLEDDEEI----GAVVFDSDFRINLPKM-YRAITYLKRPEVLF 619
P G + G Y+++ +D I GAVV D N K+ Y + + P LF
Sbjct: 192 PSDGDKKIELKPGFYMEHDKDVTTIPTLVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLF 251
Query: 620 INGATDR 640
I AT+R
Sbjct: 252 I--ATNR 256
>09_02_0119 -
4481522-4481580,4481615-4481718,4483132-4483231,
4483307-4483404,4483688-4483828,4485736-4485788,
4486578-4486649,4487730-4487801,4487895-4487987,
4489040-4489107,4489268-4489358
Length = 316
Score = 74.5 bits (175), Expect = 7e-14
Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Frame = +2
Query: 110 LSVEDFNKFLDSFDHVLSDCDGVIWTQNPLPR-VGEFFKQMKKRGKTVNFVSNNSIRSRA 286
L+ + +DS D L DCDGVIW + L V E ++K GK + FV+NNS +SR
Sbjct: 10 LTADAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTNNSRKSRR 69
Query: 287 NYEAQFKAAGIDNGFESLIIPSIAVAEYLKSATFN--KTVYCVTCTETKRVLEAHGFKCK 460
Y +F+A G++ E + S A A +LK F+ K VY V L GF+C
Sbjct: 70 QYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILEELRLAGFECL 129
Query: 461 EGP 469
GP
Sbjct: 130 GGP 132
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 50.8 bits (116), Expect = 1e-06
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Frame = +2
Query: 221 KQMKKRGKTVNFVSNNSIRSRANYEAQFKAAGIDNGFESLIIPSIAVAEYLKSATF--NK 394
+ + +GK + FV+NNS +SR Y +F+ G++ E + S A YL+S F +K
Sbjct: 58 RHARSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAYVAYLQSIDFPKDK 117
Query: 395 TVYCVTCTETKRVLEAHGFKCKEGPDLGPEYYG-EYIQYLEDDEEIGAV 538
VY + + LE GF+ GP G + + Y+E D+++ +
Sbjct: 118 KVYVIGEDGILKELELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVTTI 166
>08_02_1186 +
25027498-25029854,25029953-25030564,25031742-25031847,
25032669-25033199
Length = 1201
Score = 29.5 bits (63), Expect = 2.7
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = +2
Query: 341 IIPSIAVAEYLKSATFNKTVYCVTCT--ETKRVLEAHGFKCKEGPDLGPEYYGEYIQYLE 514
++PS+ Y F++T+Y + C+ ++KRV++ K E L E + + E
Sbjct: 24 VLPSMK--PYPPELRFDRTIY-IDCSRWKSKRVMQR---KIAEELKLDNETMASFDKQDE 77
Query: 515 DDEEIGAVVFDSDFRINLPKMYRAITYLKRPEVLFINGATDRSVPM 652
+D+ G + D +N+ I R ++F+NG+ D +P+
Sbjct: 78 EDDFSGVDICSRDAILNVSAAISRILSQSRFLMVFLNGSDD-EIPL 122
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 29.1 bits (62), Expect = 3.6
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +2
Query: 218 FKQMKKRGKTVNFVSNNSIRSR-ANYEAQFKAAGIDNGFESLIIPSIAVAEYLK---SAT 385
F++M ++ NF NS + R A + K AG+ + + I +A K S T
Sbjct: 207 FRRMIRKRDCKNFPRKNSRKMRPATMQDFLKEAGLKSMDDVDNIEMAPLAAQFKLGHSLT 266
Query: 386 FNKTVYCV-TCTETKRVLEAHGFKCKEGPDLGPEYY 490
++ + V CT+ +RV E + KEG ++ P +Y
Sbjct: 267 TDEYRHVVGKCTQMRRVEEWYLQMAKEGKEMFPVFY 302
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 62 KC*INIMGTESKHLLDLSVEDFNKFLDSFDHVLSDCDGVI 181
+C ++I + ++++ V+DF+ + +FDH L + D V+
Sbjct: 416 RCMMSIFSDMIEEIVEVFVDDFSVYGKTFDHCLQNLDKVL 455
>07_01_0065 + 466416-467465
Length = 349
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 95 KHLLDLSVEDFNKFLDSFDHVLSDCDGVI 181
K L +S ED ++FLD FD++ +D G +
Sbjct: 302 KELGKISQEDISEFLDEFDNLDADHSGTL 330
>06_03_1069 -
27345207-27345488,27345746-27346078,27346252-27347041,
27347153-27347351,27347522-27347667,27347823-27348094,
27348161-27348262,27348351-27348470,27348576-27348729,
27348986-27349114,27349554-27349900
Length = 957
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 479 PEYYGEYIQYLEDDEEIGAVVFDSDFRINLPK-MYRAITYLKRPEVLFINGATDRSVP 649
P +Y E + YLE + + F +++ +PK + ++ L V +N AT +VP
Sbjct: 359 PNFYDETLLYLEQEWKWCLTAFPEEYKSLVPKVLVETMSELNSSFVSRVNLATGDAVP 416
>06_01_0141 - 1077398-1078054
Length = 218
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 182 WTQNPLPRVGEFFKQMKKRGKTV 250
WT NP VG++F + RG+T+
Sbjct: 136 WTTNPEAEVGDYFVRRLSRGETM 158
>02_05_0064 -
25529630-25531440,25531663-25531673,25533113-25533198,
25533412-25534259,25535385-25535736
Length = 1035
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 361 HCDRWNDQALKAVVDAGCFELSFIICSGSNAIIGNEIHCL-PAFLHL 224
HC + +D+ LKAV+ GC L ++ +G I N + L + +HL
Sbjct: 141 HCRKLSDKGLKAVL-LGCQNLRQLVIAGCRLITDNLLIALSKSCIHL 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,652,159
Number of Sequences: 37544
Number of extensions: 322990
Number of successful extensions: 765
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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