Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30418
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10593| Best HMM Match : SDF (HMM E-Value=0)                         58   5e-09
SB_17428| Best HMM Match : Hydrolase (HMM E-Value=0.0047)              30   1.6  
SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)                 29   4.8  

>SB_10593| Best HMM Match : SDF (HMM E-Value=0)
          Length = 629

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 6/168 (3%)
 Frame = +2

Query: 197 LPRVGEFFKQMKKRGKTVNFVSNNSIRSRANYEAQFKAAGIDNGFESLIIPSIAVAEYLK 376
           +P V E  + ++K  K V FV+NN+ ++R  +  +F   GI      +   + + A Y+K
Sbjct: 364 VPGVPELLQSLRKLRKKVFFVTNNNTKTREQFLEKFSKYGIQASHTEIYTSAYSTAYYIK 423

Query: 377 S-ATFNKTVYCVTCTETKRVLEAHGF-KCKEGPDLGPEYYGEYIQY----LEDDEEIGAV 538
           +    NK VY +        L   G      GPD   E  G  +QY    ++ D E+G V
Sbjct: 424 NIMKCNKKVYMIGGKGLSEELTQLGIPNIGYGPDCIDE--GTDVQYDDLEVDLDPEVGTV 481

Query: 539 VFDSDFRINLPKMYRAITYLKRPEVLFINGATDRSVPMKPGLLALGTG 682
               D  I++ K  +A TY+      FI    D  +P   G+   GTG
Sbjct: 482 ACGFDQFISVKKYIKASTYIVNRGCNFIATNMDDRLPTSNGITMPGTG 529


>SB_17428| Best HMM Match : Hydrolase (HMM E-Value=0.0047)
          Length = 228

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 155 VLSDCDGVIWTQNP-LPRVGEFFKQMKKRGKTVNFVSNNSIRSRANYEAQFKAAGID 322
           VL D  G I  +N  +PR  E  K++++ G  + FV+N +  S+ +   +    G D
Sbjct: 8   VLVDLSGTIHIENSVIPRSIEALKKLRQTGLPLRFVTNTTKESKLSLLQRLTKIGFD 64


>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
          Length = 1033

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 479 ALDLDLPCI*IRELLRLFW 423
           ALD  +P I +R+LLR+FW
Sbjct: 492 ALDKQMPTIRLRQLLRIFW 510


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,656,627
Number of Sequences: 59808
Number of extensions: 391755
Number of successful extensions: 939
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)