Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30418
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative ... 90 2e-18
At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative ... 90 2e-18
At5g47760.1 68418.m05900 phosphoglycolate phosphatase, putative ... 87 1e-17
At5g09320.1 68418.m01080 vacuolar sorting protein 9 domain-conta... 30 1.3
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR... 28 5.2
At5g39010.1 68418.m04720 hypothetical protein 28 6.9
>At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative
similar to phosphoglycolate phosphatase precursor
[Chlamydomonas reinhardtii] GI:15982558; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 362
Score = 89.8 bits (213), Expect = 2e-18
Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Frame = +2
Query: 116 VEDFNKFLDSFDHVLSDCDGVIWTQNPLPR-VGEFFKQMKKRGKTVNFVSNNSIRSRANY 292
+E+ ++ +DS + + DCDGVIW + L V E ++ +GK + FV+NNS +SR Y
Sbjct: 69 LENADQLIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRAKGKRLVFVTNNSTKSRKQY 128
Query: 293 EAQFKAAGIDNGFESLIIPSIAVAEYLKSATF--NKTVYCVTCTETKRVLEAHGFKCKEG 466
+F+ G++ E + S A A YL+S F +K VY + + LE GF+ G
Sbjct: 129 GKKFETLGLNVNEEEIFASSFAAAAYLQSINFPKDKKVYVIGEEGILKELELAGFQYLGG 188
Query: 467 PDLGPEYYGEYIQYL-EDDEEIGAVVFDSDFRINLPKM-YRAITYLKRPEVLFINGATDR 640
PD G +L E D ++GAVV D N K+ Y + + P LFI AT+R
Sbjct: 189 PDDGKRQIELKPGFLMEHDHDVGAVVVGFDRYFNYYKIQYGTLCIRENPGCLFI--ATNR 246
>At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative
similar to phosphoglycolate phosphatase precursor
[Chlamydomonas reinhardtii] GI:15982558; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 362
Score = 89.8 bits (213), Expect = 2e-18
Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 5/180 (2%)
Frame = +2
Query: 116 VEDFNKFLDSFDHVLSDCDGVIWTQNPLPR-VGEFFKQMKKRGKTVNFVSNNSIRSRANY 292
+E+ ++ +DS + + DCDGVIW + L V E ++ +GK + FV+NNS +SR Y
Sbjct: 69 LENADQLIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRAKGKRLVFVTNNSTKSRKQY 128
Query: 293 EAQFKAAGIDNGFESLIIPSIAVAEYLKSATF--NKTVYCVTCTETKRVLEAHGFKCKEG 466
+F+ G++ E + S A A YL+S F +K VY + + LE GF+ G
Sbjct: 129 GKKFETLGLNVNEEEIFASSFAAAAYLQSINFPKDKKVYVIGEEGILKELELAGFQYLGG 188
Query: 467 PDLGPEYYGEYIQYL-EDDEEIGAVVFDSDFRINLPKM-YRAITYLKRPEVLFINGATDR 640
PD G +L E D ++GAVV D N K+ Y + + P LFI AT+R
Sbjct: 189 PDDGKRQIELKPGFLMEHDHDVGAVVVGFDRYFNYYKIQYGTLCIRENPGCLFI--ATNR 246
>At5g47760.1 68418.m05900 phosphoglycolate phosphatase, putative
similar to phosphoglycolate phosphatase precursor
[Chlamydomonas reinhardtii] GI:15982558; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 301
Score = 86.6 bits (205), Expect = 1e-17
Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 6/183 (3%)
Frame = +2
Query: 110 LSVEDFNKFLDSFDHVLSDCDGVIWTQNPL-PRVGEFFKQMKKRGKTVNFVSNNSIRSRA 286
LS +F DS D L DCDGVIW L V + ++ +GK V FV+NNS++SR
Sbjct: 6 LSSSNFKSLFDSVDTFLFDCDGVIWKGETLIDGVSQTLDLIRSKGKNVVFVTNNSVKSRR 65
Query: 287 NYEAQFKAAGIDN-GFESLIIPSIAVAEYLKSATF--NKTVYCVTCTETKRVLEAHGFKC 457
Y +F++ G+ + + + S A A YLK F +K VY + L+ GF
Sbjct: 66 QYAEKFRSLGVTSITQDEIFSSSFAAAMYLKVNNFPKDKKVYVIGGEGVLEELQIAGFTG 125
Query: 458 KEGPDLG-PEYYGEYIQYLEDDEEIGAVVFDSDFRINLPKM-YRAITYLKRPEVLFINGA 631
GP+ G + + E D+ +GAVV D IN K+ Y + + P LFI A
Sbjct: 126 LGGPEDGEKKAQWKSNSLFEHDKSVGAVVVGLDPNINYYKLQYGTLCVRENPGCLFI--A 183
Query: 632 TDR 640
T+R
Sbjct: 184 TNR 186
>At5g09320.1 68418.m01080 vacuolar sorting protein 9
domain-containing protein / VPS9 domain-containing
protein contains similarity to Rab5 GDP/GTP exchange
factor, Rabex5 [Bos taurus] gi|2558516|emb|CAA04545;
contains Pfam profile PF02204: Vacuolar sorting protein
9 (VPS9) domain
Length = 712
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +2
Query: 482 EYYGEYIQYLEDDEEIGA 535
EYYGE ++++E+DEEI +
Sbjct: 689 EYYGESLEFIEEDEEISS 706
>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1544
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 563 NLPKMYRAITYLKRPEVLFINGATDRSVPMKPGLL 667
+L K+ +I LK + LFING+ +P+KP L
Sbjct: 1006 SLSKIPDSINELKSLKKLFINGSAVEELPLKPSSL 1040
>At5g39010.1 68418.m04720 hypothetical protein
Length = 169
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +2
Query: 392 KTVYCVTCTETKRVLEAHGFKCKE---GPDLGPEYYGEYIQYLEDDEEIGAVVFDSDFRI 562
K V+ V T ++ EA + P GP Y +L+D +E G V F++
Sbjct: 21 KIVHHVNTTLLVKIYEASAIDDRHLFLKPYYGPPNYYFIKAWLDDTKEYGTYVVKDSFKV 80
Query: 563 NLPKM 577
N P +
Sbjct: 81 NQPPL 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,932,493
Number of Sequences: 28952
Number of extensions: 279286
Number of successful extensions: 763
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -