Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30417
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   5.7  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    26   5.7  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   7.6  
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p...    25   10.0 
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    25   10.0 

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 405 ALKQKTIREFFYHILINSLRKYYELCA*CEFFNVLDNI 292
           A K   +  FFYH++ N     Y LCA   F  V+  +
Sbjct: 378 ATKTNLVSHFFYHVVSNQ----YGLCAFSSFLVVITKV 411


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -1

Query: 393 KTIREFFYHI--LINSL-RKYYELCA*CEFFNVLDNIKGSSYLYGMGSFAC 250
           + IR+  Y +  L   L R YY+ C   E F+VL     ++  +   S++C
Sbjct: 476 QAIRKMLYRLPDLEKGLSRIYYQRCTPSEMFHVLKGFYKAASAFSKNSYSC 526


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 603 ACIRVGSERCKIAHSLGSSNDAKS 674
           AC+ +G ER  I+ SL   ND+ S
Sbjct: 571 ACVEIGKERKSISASLRDLNDSIS 594


>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 269 EWDRLPAFVARGAVPTAYKIGL 204
           +W++  AFVA+GA    Y  G+
Sbjct: 125 DWNQTQAFVAKGAQGVTYSAGV 146


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +3

Query: 522 KNEPCFSNIRSFESTKFPTLSASCSARACIRVGSERCKIAHSLGSSNDAKS 674
           +N P    ++      FP L  +C    C       C + +  G+ N+AKS
Sbjct: 97  ENGPVIKAVKEIRHL-FPELVVACDVCLCEYTDHGHCGLLYEDGTINNAKS 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,800
Number of Sequences: 5004
Number of extensions: 42196
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)