Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30417
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    53   2e-07
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127...    50   1e-06

>02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,
            1216413-1216738,1216860-1217013,1217377-1217438,
            1218078-1218133,1219456-1221279,1221775-1222698,
            1222855-1222866
          Length = 1242

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = -3

Query: 673  LLASLDDPSECAILHRSEPTRMQALALQLADKVGNLVDSNERIFE-KQGSFF 521
            L AS D P++C I H  + TR+Q L  Q+ADK+  LV+SNER +E K G  F
Sbjct: 1095 LHASWDQPTKCIIFHNVDQTRLQGLLFQMADKLSVLVESNERAYEAKTGGTF 1146


>07_01_0181 +
           1274177-1274200,1274335-1276161,1276519-1277448,
           1278314-1278367
          Length = 944

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/45 (48%), Positives = 31/45 (68%)
 Frame = -3

Query: 673 LLASLDDPSECAILHRSEPTRMQALALQLADKVGNLVDSNERIFE 539
           L AS D P++C I H  + TR+Q L  Q++DK+  LV+SNER +E
Sbjct: 781 LHASWDQPTKCIIFHNVDQTRLQGLLFQMSDKLSVLVESNERAYE 825


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,282,578
Number of Sequences: 37544
Number of extensions: 242080
Number of successful extensions: 611
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)