Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30417
(675 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical pr... 58 8e-09
Z77662-12|CAB01202.2| 338|Caenorhabditis elegans Hypothetical p... 29 3.0
AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical ... 28 7.0
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 27 9.2
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 27 9.2
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 27 9.2
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein. 27 9.2
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 27 9.2
AF067942-10|AAG45578.2| 358|Caenorhabditis elegans Hypothetical... 27 9.2
AC024831-12|AAW57824.1| 356|Caenorhabditis elegans Serpentine r... 27 9.2
>Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.4 protein.
Length = 898
Score = 57.6 bits (133), Expect = 8e-09
Identities = 24/45 (53%), Positives = 36/45 (80%)
Frame = -3
Query: 673 LLASLDDPSECAILHRSEPTRMQALALQLADKVGNLVDSNERIFE 539
L A+LD+P++C I+HR EP+R+Q LAL L+DK+ L ++NE+I E
Sbjct: 788 LSATLDEPTDCLIMHRVEPSRLQMLALNLSDKLQTLAENNEQILE 832
>Z77662-12|CAB01202.2| 338|Caenorhabditis elegans Hypothetical
protein F47B8.9a protein.
Length = 338
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +3
Query: 6 VTRFIFPKFKINEKMNTHL*N*LFLESKKKLSGVDNADEFYTINFITTMFTVCL 167
V IF FKIN KMN++L E+ KK+ A++ T+ FI T+ + L
Sbjct: 218 VVAMIFFYFKINSKMNSNL---NMSENLKKMQ--KQANQILTMQFILTLIFIQL 266
>AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical
protein ZK6.2 protein.
Length = 347
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +3
Query: 534 CFSNIRSFESTKFPTLSASCSARACIRVGSERCKIAHSLGSSNDAK 671
CF FE F A+C + C+ VG H LG N K
Sbjct: 45 CFLGENCFERPPFTRKCAACRFQKCLHVGMSLPSFLH-LGEQNKEK 89
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 172 EFFNVFDRVKVNPILYAVGTAPLATNAGKRSHSIQI*ATFYVIENVKKL 318
+F+N+ D + V L+A G A +AGK ++I+ V+ +K +
Sbjct: 802 DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIKSLRVLRVLRPLKTI 850
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 172 EFFNVFDRVKVNPILYAVGTAPLATNAGKRSHSIQI*ATFYVIENVKKL 318
+F+N+ D + V L+A G A +AGK ++I+ V+ +K +
Sbjct: 802 DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIKSLRVLRVLRPLKTI 850
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 172 EFFNVFDRVKVNPILYAVGTAPLATNAGKRSHSIQI*ATFYVIENVKKL 318
+F+N+ D + V L+A G A +AGK ++I+ V+ +K +
Sbjct: 921 DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIKSLRVLRVLRPLKTI 969
>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
Length = 1053
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 172 EFFNVFDRVKVNPILYAVGTAPLATNAGKRSHSIQI*ATFYVIENVKKL 318
+F+N+ D + V L+A G A +AGK ++I+ V+ +K +
Sbjct: 408 DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIKSLRVLRVLRPLKTI 456
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 172 EFFNVFDRVKVNPILYAVGTAPLATNAGKRSHSIQI*ATFYVIENVKKL 318
+F+N+ D + V L+A G A +AGK ++I+ V+ +K +
Sbjct: 921 DFWNILDGIVVTCALFAFGFAGTEGSAGKNLNTIKSLRVLRVLRPLKTI 969
>AF067942-10|AAG45578.2| 358|Caenorhabditis elegans Hypothetical
protein ZK6.1 protein.
Length = 358
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 534 CFSNIRSFESTKFPTLSASCSARACIRVGSERCKIAHSLGSSN 662
CF FE + + A+C + C+RVG H LG N
Sbjct: 45 CFLGEYCFERSPYTRKCAACRFQKCLRVGMRLPSFLH-LGEQN 86
>AC024831-12|AAW57824.1| 356|Caenorhabditis elegans Serpentine
receptor, class t protein23 protein.
Length = 356
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 279 YLYGMGSFACVCR*GRCSNCIQNWVN 202
+++ MGS C C G C+ CI +N
Sbjct: 114 FIFMMGSLGCGCWMGSCATCILLGIN 139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,081,920
Number of Sequences: 27780
Number of extensions: 237024
Number of successful extensions: 628
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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