Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30417
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56150.1 68416.m06241 eukaryotic translation initiation facto...    46   2e-05
At3g22860.1 68416.m02882 eukaryotic translation initiation facto...    42   3e-04
At5g16100.1 68418.m01881 hypothetical protein                          28   5.0  
At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolas...    28   6.6  

>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
           subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
           identical to SP|O49160 Eukaryotic translation initiation
           factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
           {Arabidopsis thaliana}
          Length = 900

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/47 (42%), Positives = 30/47 (63%)
 Frame = -3

Query: 673 LLASLDDPSECAILHRSEPTRMQALALQLADKVGNLVDSNERIFEKQ 533
           L AS D P+ C + H  + +R+Q+LA QL +K+  L +SNER  E +
Sbjct: 758 LHASWDQPTRCIVFHEVQHSRLQSLAFQLTEKLSILAESNERAMESR 804


>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
           subunit 8, putative / eIF3c, putative similar to
           eukaryotic translation initiation factor 3 subunit 8
           (eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
          Length = 800

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -3

Query: 673 LLASLDDPSECAILHRSEPTRMQALALQLADKVGNLVDSNERIFEKQ 533
           L A+ D P++C + H  +  R Q+LA Q+ +K+  L +SNE   E +
Sbjct: 712 LNATWDQPTQCIVFHEVQHNRAQSLAFQITEKLATLAESNESAMESK 758


>At5g16100.1 68418.m01881 hypothetical protein 
          Length = 356

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 72  LFLESKKKLSGVDNADEFYTINFITTMFTVCL 167
           LF E    +S  D+ DEF T++F+   FT+ L
Sbjct: 73  LFHELDLSISNYDSKDEFETLSFVEDGFTIPL 104


>At2g30660.1 68415.m03739 3-hydroxyisobutyryl-coenzyme A hydrolase,
           putative / CoA-thioester hydrolase, putative strong
           similarity to gi:8572760; contains Pfam profile PF00388
           enoyl-CoA hydratase/isomerase family protein
          Length = 378

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 555 MSVYSKNKARSSNGAAHSAGRGVSESGRVR 466
           M+ YSK +    NG    AG GVS  GR R
Sbjct: 97  MATYSKPQVSILNGIVMGAGAGVSIHGRFR 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,960,473
Number of Sequences: 28952
Number of extensions: 206680
Number of successful extensions: 456
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)