Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30415
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    42   0.012
UniRef50_Q4QQE8 Cluster: Endonuclease-reverse transcriptase; n=4...    40   0.050

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 42.3 bits (95), Expect = 0.012
 Identities = 20/24 (83%), Positives = 22/24 (91%)
 Frame = +1

Query: 157 ADFRFCEALLLLEMVLANSLRLSP 228
           +D RFCEALLLL +VLANSLRLSP
Sbjct: 89  SDGRFCEALLLLGLVLANSLRLSP 112


>UniRef50_Q4QQE8 Cluster: Endonuclease-reverse transcriptase; n=43;
            Eumetazoa|Rep: Endonuclease-reverse transcriptase -
            Schistosoma mansoni (Blood fluke)
          Length = 992

 Score = 40.3 bits (90), Expect = 0.050
 Identities = 16/40 (40%), Positives = 27/40 (67%)
 Frame = +3

Query: 366  HTWRRTVES*MRTAGLTWSDVKEQAQDRLKWRQLVRALCT 485
            +T RR +E+ MR     W +++++AQDR+ WR+LV   C+
Sbjct: 946  NTLRREIETDMRRMNKNWKELEKKAQDRVGWRKLVGGPCS 985


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,400,240
Number of Sequences: 1657284
Number of extensions: 13784564
Number of successful extensions: 27798
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27795
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)