Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30415
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29934| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 45   6e-05
SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_6981| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_20793| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                43   3e-04
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)                 42   4e-04
SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)         42   7e-04
SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)                 40   0.003
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_21608| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.58 
SB_15606| Best HMM Match : LRRCT (HMM E-Value=7)                       28   7.1  
SB_41037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_59592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_29934| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 290

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 369 TWRRTVES*MRTAGL-TWSDVKEQAQDRLKWRQLVRALCTSGVPQD 503
           TWRRTVE     AG   W +V+ +A DR KW+  V+ALC +   +D
Sbjct: 244 TWRRTVERERGEAGWRNWDEVRSKAADREKWKSTVKALCATRHEED 289


>SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = +3

Query: 369 TWRRTVES*MRTAGLTWSDVKEQAQDRLKWRQLVRALCTSG 491
           TWRRT+ S +    LT ++ + +A+DR KW++ V ALC  G
Sbjct: 27  TWRRTILSELSKHQLTLAEAQHKARDRRKWKRFVAALCPDG 67


>SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = +3

Query: 369 TWRRTVES*MRTAGLTWSDVKEQAQDRLKWRQLVRALCTSG 491
           TWRRT+ S +    LT ++ +  A+DR KW++ V ALC +G
Sbjct: 27  TWRRTILSELSEHQLTLAEAQHMARDRRKWKRFVAALCPTG 67


>SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = +3

Query: 369 TWRRTVES*MRTAGLTWSDVKEQAQDRLKWRQLVRALCTSG 491
           TWRRT+ S +    LT ++ +  A+DR KW++ V ALC +G
Sbjct: 27  TWRRTILSELSKHQLTLAEAQHMARDRRKWKRFVAALCPTG 67


>SB_6981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = +3

Query: 369 TWRRTVES*MRTAGLTWSDVKEQAQDRLKWRQLVRALCTSG 491
           TWRRT+ S +    LT ++ + +A+DR KW++ V ALC  G
Sbjct: 27  TWRRTILSELSKHQLTLAEAQHKARDRRKWKRFVAALCPDG 67


>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/41 (43%), Positives = 27/41 (65%)
 Frame = +3

Query: 369 TWRRTVES*MRTAGLTWSDVKEQAQDRLKWRQLVRALCTSG 491
           TWRRT+ S +    LT ++ +  A+DR KW++ V ALC +G
Sbjct: 82  TWRRTILSELSGHQLTLAEAQHMARDRRKWKRFVAALCPTG 122


>SB_20793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 369 TWRRTVES*MRTAGL-TWSDVKEQAQDRLKWRQLVRALCTSGVPQD 503
           TWRRTVE     AG   W +V+ +  DR KW+  V+ALC +   +D
Sbjct: 210 TWRRTVERERGEAGWRNWDEVRSKEADREKWKTTVKALCATRHEED 255


>SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 280

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +3

Query: 369 TWRRTVES*MRTAGLTWSDVKEQAQDRLKWRQLVRAL 479
           TWRRT+++ +   GLTW +  + A+DR +WR  V AL
Sbjct: 235 TWRRTIQAELLEMGLTWGEALKVAKDRQEWRHRVAAL 271


>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
          Length = 492

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +3

Query: 366 HTWRRTVES*MRTAGLTWSDVKEQAQDRLKWRQLVRALCTSGVPQDHNR 512
           +TWRR +++  +  G TW  ++  AQ+R  WR+LV  LC     +DH R
Sbjct: 446 NTWRRDLDADAKQMGKTWGQLERLAQNRDAWRELVGGLCPR---RDHRR 491


>SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
          Length = 666

 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +3

Query: 369 TWRRTVES*MRTAGLTWSDVKEQAQDRLKWRQLVRAL 479
           TWRRT+++ +   GLTW    + A+DR +WR  V AL
Sbjct: 621 TWRRTIQAELLEMGLTWGKALKVAKDRQEWRHRVAAL 657


>SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)
          Length = 755

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = +3

Query: 375 RRTVES*MRTAGLTWSDVKEQAQDRLKWRQLVRALCTSGVPQDH 506
           RRT+     T G TW D+K  A++R+ W+ L++ALC+    +D+
Sbjct: 633 RRTITVEHLTIGATWEDLKRTAKNRVSWK-LIQALCSGRSKEDY 675


>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 369 TWRRTVES*MRTAGLTWSDVKEQAQDRLKWRQLVRALC 482
           T RRT+ S ++  GL+W   +  A++R +WR+ + ALC
Sbjct: 82  TLRRTIASKLKDLGLSWGHAQYLARNRREWRRTILALC 119


>SB_21608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 369 TWRRTVES*MRTAGLTWSDVKEQAQDR 449
           TWRRT+++ +   GLTW +  + A+DR
Sbjct: 82  TWRRTIQAELLEMGLTWGEALKVAKDR 108


>SB_12811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1254

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 379 RRQVCTGRPGLLPRGCYSKPVDAALNVSYPAHL 281
           R+QVCT RP  +P G Y + +  A     P HL
Sbjct: 783 RQQVCTTRPSHMPTGVYYQTISHANGCVLPDHL 815



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 379 RRQVCTGRPGLLPRGCYSKPVDAALNVSYPAHLLV 275
           R+QV T RP  +P G Y + +  A     P HL +
Sbjct: 45  RQQVRTTRPSHMPTGAYYQTISHANRCVLPDHLTI 79


>SB_15606| Best HMM Match : LRRCT (HMM E-Value=7)
          Length = 245

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 382 VRRQVCTGRPGLLPRGCYSKPVDAALNVSYPAHLL 278
           +R+QV T RP   P G Y + +  A     P HL+
Sbjct: 31  IRQQVRTTRPSHTPTGAYYQTISYANRCVLPDHLI 65


>SB_41037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 382 VRRQVCTGRPGLLPRGCYSKPVDAALNVSYPAHLL 278
           +R+QV T RP   P G Y + +  A     P HL+
Sbjct: 100 IRQQVRTTRPSHTPTGAYYQTISYANRCVLPDHLI 134



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 382 VRRQVCTGRPGLLPRGCYSKPVDAALNVSYPAHLL 278
           +R+QV T RP   P G Y + +  A     P HL+
Sbjct: 202 IRKQVRTTRPSHTPTGAYYQTISYANRCVPPDHLI 236


>SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 382 VRRQVCTGRPGLLPRGCYSKPVDAALNVSYPAHLL 278
           +R+QV T RP   P G Y + +  A     P HL+
Sbjct: 727 IRQQVRTTRPSHTPTGAYYQTISHANRCVLPDHLI 761



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 382 VRRQVCTGRPGLLPRGCYSKPVDAALNVSYPAH 284
           +R QVCT RP   P G Y +    A     P H
Sbjct: 591 IREQVCTTRPSHTPTGAYYQTNSYANRCVLPNH 623


>SB_59592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 382 VRRQVCTGRPGLLPRGCYSKPVDAALNVSYPAHL 281
           +R++VCT RP   P G Y +    A     P HL
Sbjct: 20  IRQRVCTTRPTHTPTGAYYQTNSYAKRCVLPDHL 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,668,382
Number of Sequences: 59808
Number of extensions: 431903
Number of successful extensions: 814
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)