Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30413
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    29   0.53 
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    27   2.8  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.8  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    26   5.0  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   5.0  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.6  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.7  

>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 181 PTTTTFQLLPVSMENSTILHTVALSLDLPVAVSPVKYLMFTLLL 312
           P+  T  +L      ++IL T+  SL   + VSP  Y +FT LL
Sbjct: 89  PSKKTLVVLGAGWGATSILRTIDTSLFNVIVVSPRNYFLFTSLL 132


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -2

Query: 584 SHDAIMTLVLFPAVFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNST 405
           S+D I  L+     F   H+E   +    +Y   L      E+  +N  GYYD   D S 
Sbjct: 568 SYDEIRPLISILPEFAALHSEEHRMAAFDKYIRRLREKRELEKQYQNRRGYYDVGKDESY 627

Query: 404 L 402
           L
Sbjct: 628 L 628


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 675 AHFGRRQGHPSQYCRSRGHQPGPNRRRICYQSRRDH 568
           +H+  +  H S+Y R+R   PG N      QS   H
Sbjct: 202 SHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYH 237


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 157 NSALVLFSPTTTT-FQLLPVSMENSTI--LHTVALSLDLPVAVSPVKYLMFTLLLTIPNS 327
           N  L+ F  T T    LLP++     I  ++TV LSL +    S V+ L+F +L  +   
Sbjct: 290 NLILISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLHTL 349

Query: 328 LRRITTRM 351
           +  +T ++
Sbjct: 350 VNELTLKL 357


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 302 VNIRYFTGLTATGRSSDNATVCRIVEFSME 213
           +N+ Y + L+ATG S +  TV  I E + E
Sbjct: 94  INVEYQSNLSATGESVNTTTVSAINEDTRE 123


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 191 LPFNCYLFPWRILRSCIPSHYRWIFP 268
           LP + + F W    +C P H  WI P
Sbjct: 426 LPISMFWFAW----TCYPHHIHWIVP 447


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 107  GVLANRHRSTEIASSAAADGSEHSY 33
            GV +   RSTEIA + + DG+ + Y
Sbjct: 1632 GVYSPYRRSTEIAENMSMDGNAYPY 1656


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,685
Number of Sequences: 5004
Number of extensions: 74100
Number of successful extensions: 234
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)