Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30408
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    28   1.0  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    28   1.3  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.3  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    27   3.1  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   9.3  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   9.3  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    25   9.3  

>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 532 LDDPTWPGVPWERSVCYYH 476
           LD+ +W   PW  S CYY+
Sbjct: 99  LDNASWGNAPWLYSECYYY 117


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +2

Query: 74  PGAPFMGGAWERMVRAVKAALSATEQPRHPTPEIFHTLL 190
           PGAPF G  W + V  V      TE    P P+   T L
Sbjct: 29  PGAPFSGLLWVQFVGCVIMGFCQTESVFFPRPKHNATFL 67


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +2

Query: 74  PGAPFMGGAWERMVRAVKAALSATEQPRHPTPEIFHTLL 190
           PGAPF G  W + V  V      TE    P P+   T L
Sbjct: 29  PGAPFSGLLWVQFVGCVIMGFCQTESVFFPRPKHNATFL 67


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 294 RRESPCRANLTTPTS 338
           RRE PCR+N ++PTS
Sbjct: 285 RRERPCRSNGSSPTS 299


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 481 YHDVAYLQGGPAAVGLPPVLQVGQVLPEPATPEHICQ 371
           YHD  +  G P++ G  PV+++     +P   +HI Q
Sbjct: 9   YHDKVFPYG-PSSNGYNPVIRLTDRTTQPDPSQHIYQ 44


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 131 ALSATEQPRHPTPEIFHTLLAEAEFT-VNSRPLTHVSVSADDPDPLTPNHFLLGGPAR 301
           ALS     + P+P I HT  A A+   + ++PL   S+      P++     LG P +
Sbjct: 370 ALSPKPAQKPPSPTI-HTKAALADILDIFNQPLRSESLEKSSKSPISAQSSYLGTPLK 426


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -1

Query: 592 RANWVPGPPSSDAVGPRVNLLDDPTWPGV-PWER 494
           R NW P P     + P  N +++  W  +  WE+
Sbjct: 83  RKNWNPHPEDMKTIVPIHNAVNERAWQDILQWEQ 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,548,724
Number of Sequences: 5004
Number of extensions: 52177
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)