Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30408
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0585 + 5187545-5187961 31 1.0
06_01_1204 + 10397131-10398498 31 1.0
03_05_0170 + 21482962-21483018,21483133-21483183,21483313-214835... 30 1.4
06_02_0179 + 12668623-12669591 30 1.8
06_01_1200 + 10323013-10324428 30 1.8
03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870... 29 3.2
02_05_0202 + 26708049-26709074 29 3.2
01_06_1398 - 37027659-37028112,37028393-37028460,37028543-37028908 29 3.2
09_03_0082 + 12166464-12166526,12167350-12167376,12167921-121679... 29 4.2
07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976 29 4.2
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 4.2
03_05_0424 + 24107009-24107138,24107381-24107784 29 4.2
05_04_0151 + 18485095-18485766 28 5.5
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 28 5.5
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 28 5.5
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 28 5.5
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 28 7.3
09_02_0351 - 7686974-7686983,7687142-7687195,7687363-7687408,768... 27 9.7
06_03_1364 - 29590251-29590832 27 9.7
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954... 27 9.7
>08_01_0585 + 5187545-5187961
Length = 138
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +1
Query: 154 EAPDARNISYSASRGRVHSEQPTSHPRIGERRRSRPSDTE---PLPA-GRPGASPR 309
E P +R + S R+ +++ H I ERRR RP+ E P A GRPG R
Sbjct: 65 EDPSSRRPDPTLSSRRLAAKRRRPHAAIEERRRPRPAAAERRRPCVAGGRPGKKER 120
>06_01_1204 + 10397131-10398498
Length = 455
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -1
Query: 472 VAYLQGGPAAVGLPPVLQVGQVLPEP 395
VA L+ G A GLPPV VG + P P
Sbjct: 208 VAALRQGTVAAGLPPVFAVGPLSPAP 233
>03_05_0170 +
21482962-21483018,21483133-21483183,21483313-21483500,
21483587-21483671,21483848-21483902,21483998-21484041,
21485045-21485113,21485207-21485307,21485396-21485452,
21485540-21485636
Length = 267
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 598 HYRANWVPGPPSSDAVGPRVNLLDDPTWPGVPWERSVCYYHDVAYL 461
HY + G +S A+G +L DDPTW P + + + H ++
Sbjct: 58 HYPDHKFIGEETSAALGATADLTDDPTWIVDPLDGTTNFVHGFPFV 103
>06_02_0179 + 12668623-12669591
Length = 322
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 570 PPRVMPSAPG*TSWMIP-RGQVFRGSVPSAIITTSPIF 460
PP PSA G T ++ +GQV GSV +I P+F
Sbjct: 182 PPPAPPSASGLTVFLSGGQGQVVGGSVAGQLIAAGPVF 219
>06_01_1200 + 10323013-10324428
Length = 471
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 472 VAYLQGGPAAVGLPPVLQVGQVLP 401
VA LQ G A G PPV VG +LP
Sbjct: 226 VAALQQGKVASGFPPVFAVGPLLP 249
>03_02_0467 +
8707777-8707892,8708030-8708096,8708190-8708260,
8708629-8708746,8708820-8708893,8709278-8709333,
8709448-8709531,8709611-8709698,8709786-8709863,
8710335-8710391,8710606-8711044
Length = 415
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 361 STTSGRCVLESLAPGVPARPAEPAGAP 441
S T G+ VLES+A GVP A G P
Sbjct: 309 SETLGQVVLESMASGVPVVAARAGGIP 335
>02_05_0202 + 26708049-26709074
Length = 341
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 478 HDVAYLQGGPAAVGLPPVLQVGQVLPEPATPEH 380
H ++++GG PPV Q P+P PEH
Sbjct: 216 HRASHVRGGRGGCCAPPVAPPPQPHPQPPLPEH 248
>01_06_1398 - 37027659-37028112,37028393-37028460,37028543-37028908
Length = 295
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 205 HSEQPTSHPRIGERRRSRPSDTEPLPAGRPGASPRA 312
HS T RR +RP+ P P R GA+P A
Sbjct: 12 HSPAATHQLPTSPRRSTRPAPPPPCPCPRAGAAPAA 47
>09_03_0082 +
12166464-12166526,12167350-12167376,12167921-12167993,
12168517-12168773
Length = 139
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +3
Query: 234 YR*APTIPTL*HRTTSCWEARRESPCRANLTTPTS*GAHTGAQHNVWQMCSGVAGSGSTC 413
YR +P++P R S + + SPC TT T +H G+ +V +G+ SG+ C
Sbjct: 63 YRSSPSLP---QRPRSSYSS--SSPCPHAFTTSTVAPSHPGSSGSVDPPVTGMLDSGTHC 117
>07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976
Length = 562
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Frame = +2
Query: 239 VSADDPDPLTPNHFLLGGPARV-------PVPGKFDDADLIGRAHWRAAQRLADVFWSRW 397
V+AD+ + +LGG RV PG D D +G A + D R
Sbjct: 179 VTADNVSGTALHQAVLGGHTRVVEILLMKTAPGLIDLTDAVGNTALHFAAQKNDKRMVRM 238
Query: 398 LREYLPDLQNRR 433
L ++ PDL +RR
Sbjct: 239 LLDHKPDLAHRR 250
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 329 RRQICPARGLAPGLPA-GSGSVSEGRDRRRSPI 234
RR++ PA G PA G+G + +G+ RR+ P+
Sbjct: 47 RRRVAPAGGCCLLTPAAGAGRLQQGKGRRKLPL 79
>03_05_0424 + 24107009-24107138,24107381-24107784
Length = 177
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +1
Query: 166 ARNISYSASRGRVHSEQ----PTSHPRIGERRRSRPSD-TEPLPAGRPGASP 306
A + S +A RG + + PTS + RR SRP + T P+ RP +SP
Sbjct: 98 AASQSGAARRGELEGDPAEGWPTSPTQCRHRRPSRPPETTTATPSSRPASSP 149
>05_04_0151 + 18485095-18485766
Length = 223
Score = 28.3 bits (60), Expect = 5.5
Identities = 25/67 (37%), Positives = 31/67 (46%)
Frame = -3
Query: 431 AGSAGRAGTPGASDSRTHLPDVVLRASVRAL*GRRRQICPARGLAPGLPAGSGSVSEGRD 252
AG G A D P+ LR L G R+Q R +PGL + S +E R
Sbjct: 155 AGGGKAGGEAAADDQLCSTPE--LRKHYMQLVGARQQ----RPWSPGLE--TISEAEKRR 206
Query: 251 RRRSPIR 231
RRRSP+R
Sbjct: 207 RRRSPVR 213
>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -2
Query: 306 GTRAGPPSRKWFGVRGSGSSALTDTWVRGRLFTVNSASASRV*NISGVGCLGCSVAESAA 127
G + G P W G +T +++ ++ + ASA + G GC C E AA
Sbjct: 1185 GDKNGAPQGPWRGGGYKSEEEITAVYMKEKMKKI--ASAKKKSGRGGWGCKACCKMEDAA 1242
Query: 126 FTAR 115
+A+
Sbjct: 1243 RSAK 1246
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Frame = +1
Query: 205 HSEQPTSHPRIGERRR-----SRPSDTEPLPAGRPGASPRAG 315
H P HP G R + P ++P+P G P A+P AG
Sbjct: 67 HHGAPAPHP--GRRSPPAPAPANPPSSDPMPGGAPSAAPAAG 106
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 361 STTSGRCVLESLAPGVPARPAEPAGAP 441
S T G+ VLES++ GVP A G P
Sbjct: 298 SETLGQVVLESMSSGVPVVAARAGGVP 324
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -2
Query: 339 MRSASSNLPGTGTRAGPPSRKWFGVRGSGS 250
MR S P TG G P FGV GSG+
Sbjct: 549 MRGPPSPFPQTGPTPGMPPAGGFGVPGSGN 578
>09_02_0351 -
7686974-7686983,7687142-7687195,7687363-7687408,
7688179-7688280,7688683-7689284,7689599-7689783
Length = 332
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 196 GRVHSEQPTSHPRIGERRRSRPSDTEPLPAGRPGASPRAGQI 321
G S T P+ GERRRS P AG+ A G +
Sbjct: 127 GAGSSSSRTHQPQTGERRRSTPETGSSKSAGKRPARREEGPL 168
>06_03_1364 - 29590251-29590832
Length = 193
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -2
Query: 339 MRSASSNLPGTGTRAGPPSRKWF--GVRGSGSSALTD--TWVRGRLFTVNSASASRV 181
+R A+ L G RAG P KW V+ S+ALTD T + G V++A+ S +
Sbjct: 112 LRDAAQELGGNMGRAGSPGFKWHLSNVQTWCSAALTDENTCLDGLSRGVDAATRSAI 168
>02_02_0375 +
9543411-9543872,9547222-9547290,9547382-9547384,
9548336-9548422,9549027-9549094,9549192-9549333
Length = 276
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 160 PDARNISYSASRGRVHSEQPTSHPRIGERRRSRP--SDTEPLPAGRPGASPRAG 315
P + + +A+ R +P PR+ RRR+RP + E P G G+S G
Sbjct: 24 PSPKPPAATAAYHRGGDNEPVLFPRLFLRRRARPAAAPAEAPPVGPDGSSSGGG 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,912,287
Number of Sequences: 37544
Number of extensions: 490193
Number of successful extensions: 2041
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2040
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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