Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30408
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39110.1 68417.m05538 protein kinase family protein contains ...    33   0.16 
At5g53570.1 68418.m06656 RabGAP/TBC domain-containing protein si...    31   0.65 
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi...    30   1.1  
At2g47930.1 68415.m05993 hydroxyproline-rich glycoprotein family...    29   3.5  
At5g59100.1 68418.m07404 subtilase family protein contains simil...    28   6.1  
At3g03380.1 68416.m00336 DegP protease, putative contains simila...    27   8.1  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    27   8.1  

>At4g39110.1 68417.m05538 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 878

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +2

Query: 194 EAEFTVNSRP--LTHVSVSADDPDPLTPNHFLLGGPARVPVPGKFDD 328
           +AE T N++P  +T  SV   DP P+TP+       A VPVP K ++
Sbjct: 809 KAEETENAKPDVVTPGSVPVSDPSPITPS-VTTNEAATVPVPAKVEE 854


>At5g53570.1 68418.m06656 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 550

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -2

Query: 333 SASSNLPGTGTRAGPPSRKWFGVRGSGSSALTDTWV--RGRLFTVNSASASRV 181
           S+SS+LP + + + PPS        S SS+ + +W+  R  LF  N +S S V
Sbjct: 25  SSSSSLPSSSS-SSPPSSNSNSYSNSNSSSSSSSWIHLRSVLFVANLSSPSSV 76


>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
           protein similar to RNA binding protein PufA GB:AAD39751
           [Dictyostelium discoideum] and similar to Pumilio
           protein GB:A46221 [Drosophila sp.]
          Length = 1003

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 336 RSASSNLPGTGTRAGPPSRK-WFGVRGSGSSALTDTWVRGRLFTVNSASASRV 181
           RS +S LP  GTR GP  +K  FG       + T   V   L  +N +  S+V
Sbjct: 313 RSTASGLPPIGTRVGPVEKKNTFGTAIQNCESYTAADVADTLSRLNMSEMSQV 365


>At2g47930.1 68415.m05993 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 136

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +2

Query: 131 ALSATEQPRHPTPEIFHTLLAEAEFTVNSRPLTHVSVSADDPDPLTPNHFLLGGPARVPV 310
           A+S    P  PTP       + +E ++   P    S+S  +PD +TP+  L   P   P+
Sbjct: 48  AMSPDTSPLFPTPGSSEMSPSPSESSI--MPTIPSSLSPPNPDAVTPDPLLEVSPVGSPL 105

Query: 311 P 313
           P
Sbjct: 106 P 106


>At5g59100.1 68418.m07404 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 741

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -2

Query: 294 GPPSRKWFGVRGSGSSALTDTWVRG-RLFTVNSASASRV*NISGVGCLGCSVAESAA 127
           GPP +KW G    G +   +  V G R +T  S +     + SG G    S+A   A
Sbjct: 160 GPPPKKWKGTCAGGKNFTCNNKVIGARDYTAKSKANQTARDYSGHGTHTASIAAGNA 216


>At3g03380.1 68416.m00336 DegP protease, putative contains
           similarity to degP GI:2623992 from [Bradyrhizobium
           japonicum]
          Length = 1097

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 188 LAEAEFTVNSRPLTHVSVSADDPDPLTPNHFL 283
           + E E     +PL+ VSVS  D   +TP+HFL
Sbjct: 350 ILELEIERGGQPLS-VSVSVQDLHSITPDHFL 380


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 296  ARVPVPGKFDDA-DLIGRAHWRAAQRLADVFWSRWLREYLPDLQNRREPHSRGPALKIGD 472
            ARV     FD A + +G+   +   ++    W  W+ + L  LQ    PH +   LKI  
Sbjct: 3059 ARVLYLLSFDTANEPVGKVFDKHLDQVPHWVWLSWIPQLLLSLQRTEAPHCKLVLLKIAA 3118

Query: 473  V 475
            V
Sbjct: 3119 V 3119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,291,861
Number of Sequences: 28952
Number of extensions: 316304
Number of successful extensions: 1018
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)